25 November 2012, Volume 32 Issue 11
    

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  • ZHAO Yu-jiao, PAN Yue, YAN Ling-mei, YUE Yao-fei, YANG Li-juan, SUN Qiang-ming
    China Biotechnology. 2012, 32(11): 1-7.
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    Objective: To select the adaptive strain of Dengue-Ⅱ virus D01090 strain in KMB17 cells, which lay the foundation of the exploration of dengue vaccine using human cells as host. Methods: After extraction of dengue-Ⅱ D01090 strain genome and identification of the serotype of dengue virus through RT-PCR, the virus was replicated an detected for the titer; The Dengue-Ⅱ D01090 strain was subcultured in KMB17 cells with 4.0 MOI till the virus completely adapted to multiply in cells, then continued subculturing in KMB17 cells for 10 passages. The adapted strain was screened out, Virus culture fluid was purified by sucrose gradient centrifugation and ultracentrifugation, KMB17 cells was ultrathinsected and observed the pathology under transmission electron microscope after infected with virus; Adapted strain was purified through plaque assay, and the antigenicity was detected by IFA. Results: After dengue-Ⅱ virus D01090 strain RNA was extracted as templete, a typical 511bp gene segment of dengue virus and a specific 119bp gene segment of dengue-Ⅱ virus were amplified by RT-PCR. After replication in C6/36 cells, the virus titer could reach 4.5 CCID50/ml, The CPE of KMB17 cells was appeared earlier after continuous subculture, their titer increased with the increasing passages and get the highest 5.0 CCID50/ml on passage 10.KMB17 cells was ultrathinsected and observed the pathology under transmission electron microscope after 6 days infected with virus and CPE get +++, the new packaging virus particles were observed in the endoplasmic reticulum, many small fragment were generated around the cell, with the virus drifting out of the cell. Purified virus strain was screened through three cycles of plaque purification, while antigenicity of purified strain was positive detecting by IFA. Conclusion: Dengue-Ⅱvirus D01090(China) adapted strain was screened out which could stably proliferated in KMB17 cells and keep a high virulence, also maintained good antigenicity through plaque purification.
  • XIE Yan-fei, CHEN Ying-ying, ZUO Ai-ren, CAO Rong-yue
    China Biotechnology. 2012, 32(11): 8-13.
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    To observe the anti-angiogenesis activity of Mycobacterium Tuberculosis Heat Shock Protein 65, a prokaryotic expression vector pET-28a-Hsp65 was built. The recombination protein HSP65 were acquired by anion exchange column chromatography and then mixed with Freund's adjuvant to immunize the C57BL/6J mice once a week for six times. Two weeks after last immunization, B16-F10 melanomas cells were intradermally inoculated to investigate the immunogenicity and pharmacodynamic action of these vaccines. The results showed that the persistently high titer of anti-HSP65 antibodies were induced and the angiogenesis around the tumor were significantly inhibited by 41.01% compared with the control group. To further explore the possible mechanism, immunohistochemistry were done to detect the VEGF expression in tumor surface which showed a significant reduction in immunized group. However, the precise mechanism still need more investigation.
  • XIE Jia-ying, XU Wen-chun, XU Dao-jing, ZHANG Xiao-yan, TANG Min
    China Biotechnology. 2012, 32(11): 14-22.
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    Objective: To study the role of Notch signaling pathway in bone morphogentic protein 9(BMP9) induced osteogenic diffierentiaion of marrow-derived mesenchymal stem cells and its mechanism. Method: After treatment C2C12 cells with recombinant adenovirus GFP and BMP9 (AdGFP/AdBMP9), the early osteogenic marker Alkaline phosphatase (ALP) activity was detected by staining assay, later osteogenic marker calcium deposition was determined by Alizarin Red S staining. Effects of Notch signaling pathway on ostegenic differentiation was detected by cell-density assay and Notch signaling pathway inhibitor (DAPT). The receptor of BMP9, Smad1/5/8 and some transcription factors were detected in order to study the its mechanism. Results: AdBMP9 is not only increased the activity of ALP on days 3, 5, 7 matrix mineralization on 7d and 14d in a dose-dependent manner. Notch specific inhibitor DAPT decreased ALP activity and the expression of OCN. Furthermore, DAPT markedly change expression level of ALK2 and ostegenic differentiation marker Runx2 and Col1a-α induced by BMP9 of C3H10T1/2. DAPT did not change total protein level of Smad1/5/8, however, DAPT increased the phosphorlated form of Smad1/5/8. Conclusion: Notch signaling pathway can enhance BMP9-induced osteogenic differenitiation of marrow-derived mesenchymal stem cells possibly by up-regulating the expression of its ligands and receptors through BMP9, Notch signaling pathway feedback up-regulates BMP9 signaling, thus leading to osteogensis.
  • LIU Qi-gang, DAI Yun-jian, ZHANG Yong-xia, WANG Bao-cheng, WANG Ming-rong
    China Biotechnology. 2012, 32(11): 23-28.
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    Objective: An anti-IgE scFv was used to investigate the influence of different host strains, growth media, and culture conditions on the high-level expression of soluble single-chain antibody fragment in E. coli periplasm. Method: Three engineered bacterial strains, Rosetta (DE3), BL21(DE3), and SoluBL21(DE3), were constructed and effects of different carbon sources, nitrogen sources, growth media, and culture conditions on the amount of expression of soluble anti-IgE scFv were evaluated. Results: The expression level of pET-IgE26, a plasmid that carried anti-IgE scFv sequence, was significantly enhanced in the novel host strain SoluBL21(DE3), compared to that in traditional Rosetta (DE3) and BL21(DE3) host strains. After optimization of carbon and nitrogen sources, growth media and culture conditions, the optimal growth media for high-level expression of soluble recombinant antibodies in SoluBL21(DE3) engineered strain was found to be M9 medium with 0.5% glucose, 0.6% bacto casitone, and 0.02% trace elements. The best culture condition was defined as growing overnight culture in LB medium at 37℃, until OD600 reached approximately 3.0, then inoculate the optimal growth media with the overnight culture at 5% inoculum concentration, shake at 37℃, 260r/min for 3.5h. For induction, lower the temperature to 25℃ when OD600 is between 1.5~1.8, add 0.1mmol/L IPTG, and incubate at 220r/min for 16h. ELISA detected that the expression of soluble anti-IgE scFv increased by 5-fold after optimization. Conclusion: Expression of recombinant scFv in E coli periplasm can be significantly enhanced through optimization of host strain types, growth media, and culture conditions. The study provides technical support for scale-up production of anti-IgE scFv and insights into the production of recombinant micromolecular antibody by E. coli.
  • SHEN Qiu-shuo, CHEN Feng, YE Qing, LI Tao, CHEN Xin-bo, ZHANG Xian-wen
    China Biotechnology. 2012, 32(11): 29-34.
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    In order to clarify stress-inducible rice promoter function, the three heat- and salinity-induced genes (Os11g0453900, Os09g0526600, Os05g0381400) were picked out based on our previous microarray data of rice panicle and GEO database query. According to the bioinformatics analysis on the 1.5kb promoter sequences upstream of ATG, the 3 promoter fragments comprising specific cis-elements responsive to ABA, high temperature, high salinity were cloned, and named after Rab16Dp、OsHsfB2cp and PM19p, respectively. The results of Agrobacterium-mediated transient expression showed that Rab16Dp and OsHsfB2cp exhibited obvious activity to drive GUS gene expression under high temperature and salinity, but PM19p had no detectable activity under these conditions. The present work set the seal on the further research on the three promoters, and will provide important clues for the development of stress-inducible rice promoters.
  • SUN Cai-xia, WANG Ying, WU Xiao-fei, CHEN Li-jun, WU Zhi-jie
    China Biotechnology. 2012, 32(11): 35-41.
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    The term of metabolome has been used to describe the responses of plant to external perturbations recently. The study of metabolite profiling of different insect-resistant cottonseeds and their non-transgenic counterparts using 1H NMR and multivariate analysis technique was performed to investigate the unintended metabolic variations associated with genetic modifications. The results obtained showed that the overall appearance of the spectrum was quite similar among different cottonseeds. However, there were many different peak signals in the animo acids region (3~0.5 ppm) of the expansion spectra of transgenic cottonseeds when compared with their controls. Although score plots generated using principal component analysis showed the potential to distinguish transgenic cottonseeds from non-transgenic controls, a better classification between them was obtained by partial least square-discriminant analysis. The major compounds contributing to the discrimination were those metabolites that involved the metabolic pathway of fatty acid, the primary nitrogen metabolism and the tricarboxylic acid cycle.
  • ZHAO Qing, WANG Gang, JI Jing, JIN Chao
    China Biotechnology. 2012, 32(11): 42-48.
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    In order to investigate the function of DREB2ACA in plant salt-tolerance reaction and thus to explore its application value in genetic engineering. DREB2ACA was cloned using SOE-PCR, and was constructed in plant expression vector driven by rd29A promoter. Tobacco plants were genetically transformed with the vector. Integration of the T-DNA was confirmed using southern blot and expression of the target gene under salt stress were tested using RT-PCR. Compared to the control, transgenic lines had higher photosynthesis pigments, enhanced photosynthesis rate and lower MDA level under salt condition. All results demonstrate that DREB2ACA is probably a promising candidate gene for drought improvement in crops.
  • JIA Ming-liang, ZHANG Ben-hou, GAO Wei-ping, CHEN Ji-shuang, OUYANG Ping-kai
    China Biotechnology. 2012, 32(11): 49-54.
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    Objactive: To improve a new system for micropropagation of Pinellia ternata (Thunb.) Breit. in a temporary immersion bioreactor. Methods: Average number of tubers per plantlet (NTPs), Fresh weight (FW), Average fresh weight per plantlet (FWPs), Dry weight/Fresh weight (DW/FW) and the status of plantlet were studied refering standards. Firstly, leaves, petioles and cluster buds were cultured to establish the best explants type in the temporary immersion system. Secondly, petioles were cultured in the temporary immersion system, solid and liquid culture methods to compare the training effect. Results: Different types of explants were cultured in this temporary immersion system. Highest NTPs of 39.15 was achieved by culturing cluster bud. The petiole was 27.65 and the leaf was 18.05. Fresh weight has the same rule with NTPs. FWPs and DW/FW both have no significant differences. The plantlets induced by petioles were the most robust and which were more in thin induced by cluster buds. NTPs induced by petioles were achieved by different culture methods were as follows: temporary immersion system was 24.73, solid culture method was 14.75 and liquid culture method was 12.26. FWPs and DW/FW of temporary immersion system were optimal. The solid method and temporary immersion system were the suitable culturing methods for. The status of plantlets cultured by solid method was better than temporary immersion system. And the plantlets of temporary immersion system were thinner. Length of stoma guard cell (LSGC), Width of stoma guard cell (WSGC) and Average number of chloroplast per stoma guard cell (NCPs) have no significant difference between the two methods. The vitrification of plantlets cultured by liquid method has less number of chloroplasts, so the liquid method was not suitable for cultivation of Pinellia ternata (Thunb.) Breit. Conclusion: Petioles and cluster buds are suitable for the temporary immersion culture, and the petiole is better. Compared with conventional solid and liquid culture, temporary immersion culture system behaved as the best in various physiological indexes and that this system has the potential of large-scale micropropagation for this medicinal plant.
  • WANG Zheng-hua, ZHU Bei-lin, ZHAO Yun, ZHOU Jie, WU Zi-rong, HUANG Jing
    China Biotechnology. 2012, 32(11): 55-60.
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    Protein-glutaminase, a novel protein-deamidating enzyme, which has potential for industrial applications. The gene encoding the protein was synthesized using overlap extension PCR and the mature PG gene was cloned into expression vector pET32a(+). The recombinant protein was expressed in Escherichia coli BL21(DE3) as inclusion bodies, and the active PG was obtained after denaturation and renaturation. In order to improve the solubility of PG, the culture was incubated in cold-shocked condition and a chaperone plasmid pTf16-tig was also cloned into pET32a-matPG/BL21(DE3). The results showed that low temperature can improve the solubility of PG slightly. but pTf16-tig was futile. For deamidating activity assay, Cbz-Gln-Gly was used as substrate. The reaction showed that PG can effectively hydrolyzed glutaminyl residues in the Cbz-Gln-Gly and resulting in release of ammonia. The research on enzymatic properties of PG showed that the optimum temperature is 40℃ and the optimal pH is 6.0. The gene encoding protein-glutaminase was synthesized and expressed successfully. The research provided a new idea for heterologous expression of this particular food-enzyme using genetic engineering.
  • XU Yong, SHEN Chong, QIU Xing-tian, CAI Peng, HUANG Min-ren, YU Shi-yuan
    China Biotechnology. 2012, 32(11): 61-69.
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    The high quality forward and reverse SSH-cDNA libriries were constructed by suppressing subtractive hybridization (SSH) for a model xylose-metabolizing yeast strain Candida tropicalis. About 1 013 and 525 ESTs in two SSH-cDNA libriries were sequenced by Sequencer PRISM ABI3730. From the sequences data, 525 and 288 unigene were gotten and annotated and analyzed by GO classification, in addition 67 and 12 unigene were found as potential new genes. Some candidate genes were selected based on combination analysis method of the traditional metabolism theory and common genes deletion by unigene BLAST between two SSH-cDNA libriries, these genes were then tested and detected for relative quantitative comparison of gene transcript by RT-PCR technology. Some key genes related to sugar metabolism and ethanol fermentation were put forward, involving gene STP, HAGT, XR2, XDH1, XDH2 and ADH. It will benefit and provide theoretical guidance for related research on transcript profile, gene recombination, metabolic engineering and fermentation controlling of xylose metabolism and ethanol fermentation in Candida tropicalis and other xylose fermenting strains.
  • WANG Wei, LI Zhong-hai, LI Ji-li, ZENG Bo-quan
    China Biotechnology. 2012, 32(11): 70-74.
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    The mechanism of end product inhibition exists in gibberellin acid (GA3) biosynthesis of mycelium of Gibberella fujikuroi. Fermentation technology coupling with resin extraction would decrease the product inhibition and enhance the efficiency of GA3 production. Four macroporous resins were tested for their static adsorption/desorption performance towards GA3, and D-100 resin was selected as adsorbent through the method compared the adsorption capacity of the GA3 and elution efficiency. The facts about addition time and the amount of resin were studied by regression and response surface analysis. The experimental results showed that the optimal addition time and amount of resin were 70.75h and 2.02%, accordingly. The total gibberellin productivity and average specific production rate in the fermentation was 221.75mg and 0.96mgGA3/(gBiomass穐), respectively. Using the coupling technology in the fermentation, the gibberellin production increased by 149.6% compared with controls without D-100 resin.
  • CUI Ming-quan, XU Jie, ZHANG Ting-ting, WANG Tong-kun, SHANG Wei, CHEN Ze-liang, YUAN Jing, DU Xin-ying, WANG Zhou-jia, KE Yue-hua, ZHONG Zhi-jun, YUAN Xi-tong, HUANG Liu-yu, PENG Guang-neng, WANG Yu-fei
    China Biotechnology. 2012, 32(11): 75-80.
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    Epitope tagging of chromosomal gene hfq in Brucella melitensis were constructed by suicide vector to study the function of the RNA molecular chaperone Hfq. The epitope-tagging cassettes were obtained by PCR amplification from the genomic DNA of B. melitensis 16M with primers that carry homologous to the targeted gene hfq and FLAG or HIS encoding sequences (reverse primer). Then, the epitope-tagging cassettes were ligated with pMD18-T vector, resulted in epitope-tagging plasmids. The tagging plasmids were transformed into recombination competent cells and C-terminal-tagged recombinants were selected by ampicillin resistance. The transcription of resulting C-terminal-tagged hfq was identified by RT-PCR. And the expression of the tagged Hfq was detected indirectly by the antibodies against FLAG or HIS tag. As the results showed, it is a convenient method for adding an epitope-encoding tail to the interesting gene in the Brucella chromosome. The method described here provides a powerful tool in the functional study of Brucella genes.
  • SHEN Zi-yue, LV Zhe, QIN Zong-hua, LI Ren-qiang
    China Biotechnology. 2012, 32(11): 81-85.
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    Objective: The interactional proteins with shrimp main allergens were studied by pull-down technology. Methods: Sepharose 4B polymer beads were activated by using epichlorohydrin, shrimp main allergen (tropomyosin) was coupled to them to prepare a chromatography column, which was applied to capture the interactional proteins with shrimp main allergens from patient's serum. Results: SDS-PAGE and indirect ELISA showed that at least two proteins in patient's serum were captured by shrimp allergen, they were allergen-specific IgE and IgG respectively. The result showed that the allergy is mediated not only by IgE, IgG also plays a role. Conclusion: The pull-down technique performed is a rapid and effective method to study protein-protein interactions and is based on the immune affinity chromatography principle.
  • GAO Guang-jun, KE Yue-hua, XU Jie, WANG Li-ping, ZHANG Zhen-fang, LI Zhuo-ling, GUO Ying-fei, WANG Lu-lu, WANG Yu-fei, XU Xing-ran, CHEN Ze-liang
    China Biotechnology. 2012, 32(11): 86-91.
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    Objective: To construct a deletion mutant of virB of B. ovis for functional analysis of Type IV secretion system by using T vector based rapid cloning technique. Methods: The promoter region of virB was deleted by Kanamycin gene through homologous recombination. Transcription of virB genes were verified by RT-PCR. The survival capabilities of the mutant under stress conditions simulating intracellular environments were tested. Results: A deletion mutant of virB was successfully constructed. Expression of the virB genes were inhibited in the mutant. Compared with the wild type strains, the mutant showed altered survival capabilities under stress conditions. Conclusion: A deletion mutant of virB was successfully constructed by using T vector cloning and resistance gene replacement. This provide basis for further functional analysis of type IV secretion system.
  • ZHAO Yu-qing, LI Jin, ZHOU Guang-qi, REN Zheng-yu, YANG Hong-ze, SUN Tian-zhu, XING Yan-jie
    China Biotechnology. 2012, 32(11): 92-97.
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    In order to solve the application of adsorption of heavy metal by microorganism, nickel-resistant strain was screened. The specific adsorption of nickel by the strain was investigated under the optimum conditions. Studies illustrated that the thermodynamic adsorption of Ni2+ by nickel-resistant strain could be described by Langmuir model. Under optimal conditions, the saturated adsorption capacity is up to 92.59mg/g as nickel-resistant strain absorbs Ni2+ to two hours. The adsorption kinetics of Ni2+ by nickel-resistant strain fitted the second-order kinetic model. Based on the curve of adsorption rate versus time, the following information canfitured out: When the concentration of Ni2+ is 25mg/L and the adsorption time is two hours, the adsorption tends to reach the balance and the rate of adsorption can reach up to 97.7%. The nickel-containing wastewater that exceeds the national standard of 50 times is close to the emission standard through primary treatment. The bacteria bears specific adsorption capability for nickel in wastewater. The thermodynamic model, IR spectra and AFM detection showed that the adsorption of Ni2+ by nickel-resistant strain mainly occurred on the surface of the thallus. The main adsorption sites were the h穜oxyl and amidogen groups from the protein and polysaccharide on the exocellular polymer of strain. It is conducive to recycle the bacteria during its application as engineering bacteria.
  • TAN Tan, LIANG Qian-jin
    China Biotechnology. 2012, 32(11): 98-106.
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    Centrosome is a significant organelle without membrane in animal cells and some lower plant cells. Normally, centrosomes participate cell division (mitosis), form spindle which is based on microtubules and then pull the duplicated chromosomes to the opposite poles of the cell. This process ensures that genetic materials (DNA) can pass from one generation to the next accurately, orderly and perfectly. Like other essential organelles related with cell division and proliferation, the behavior and regulation of centrosome also depends on many function-related proteins. In these proteins, one part connects with centrosome duplication and separation, ensuring centrosome cycle achieved; the other part, not only associates with cell cycle and centrosome, but also plays vital roles in other aspects. Regardless of normal cells or abnormal cells (e. g. tumour cells), protein modifications, especially the phosphorylation modification, dominate in cell regulation. As one kind of the major organelles cells, centrosome contains many centrosomal proteins depend on phosphorylation regulation. To provide references for future research, the centrosome cycle related protein phosphorylation and function were reviewed.
  • DUAN Yue-jiao, XUE Chao-you, LU Wen-yu
    China Biotechnology. 2012, 32(11): 107-114.
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    Polyketides have been widely used in clinical because of their important biological activities. But in the natural strains there are various of limitations in the process of synthesis that affect the application of the polyketides. The heterologous expression can lift the restriction as a useful tool. The key limiting factor for heterologous expression of polyketides is the inadequate supply of intracellular precursors. An overview on strategies to improve the supply of the precursors in the typical heterologous expression host strains is provided: introduce the biosynthetic pathway of the precursors to the heterologous expression host bacteria to reconstruct the metabolic network, over-express the synthesis pathway of the heterologous precursor, inhibite metabolic branch flux, knockout within-derived metabolic pathways, to improve the supply of precursors. It provides a reference for research and industrial production of heterologous expression
  • LI Kun-peng, ZHU Hua-bin, HAO Hai-sheng, ZHAO Xue-ming, FENG Rong, QIN Tong, ZHANG Lin-bo, WANG Dong
    China Biotechnology. 2012, 32(11): 115-123.
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    Full-length sequence is the basic premise of the study on genetic function of new gene, three amplification methods of the full-length sequence of gene, inverse PCR, adapter-mediated PCR and random primer PCR, have been established based on PCR(polymerase chain reaction). Although the early established inverse PCR is inefficient in the ligation procedure and bring forth more non-specific amplification, it's extensively used in the identification of T-DNA insertion sites and gene fusion sites for its simplicity and quickness. With the improvement of the specificity, adapter-mediated PCR is getting more and more popular, many novel technologies, such as single specific primer PCR, capture PCR and step-down PCR, were derived, and the ideal amplification effects were obtained. Recently, owing to its high degree of automation, random primer PCR is playing an important role in the analysis of a large number of samples. With the discovery of powerful enzymes, such as, DNA polymerase, ligase and reverse transcriptase, the development of the strategies for obtaining full-length sequence by PCR amplification technology were promoted, many strategies were improved and integrated, and better experimental results were obtained, it provided more complete information for the study of gene structure, function and transcript characteristics.
  • JIAO Jing-yu, WU Mian-bin, ZHAO Jiong-feng, LIN Jian-ping, YANG Li-rong
    China Biotechnology. 2012, 32(11): 124-131.
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    Xylitol as a five carbon sugar alcohol and low caloric content, has been widely used in medicine, food and chemical fields. Compared with chemical synthesis method, biological synthesis method has become a research focus because of its mild operation conditions, low energy consumption, and little environmental pollution. However, there also exist the leading obstacles to the commercial production of xylitol by bioconversion, such as the different xylose metabolic pathways existed in natural microorganisms, nonspecific nature of xylose reductase(XR), and requiring nicotinamide cofactors (NADH and NADPH) in biosynthesis of xylitol. Based on reviewing and analyzing the current understanding on biocatalytic routes to xylitol production, novel genetic engineering strategies through improving metabolic pathways of microorganisms which can improve the biological catalytic conversion of xylitol yield were emphasised.
  • YE Jing, XU Jing-liang, XIAO Bo, YUAN Zhen-hong, XU Hui-juan, YANG Liu, LI Xie-kun
    China Biotechnology. 2012, 32(11): 132-136.
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    To improve the economic benefits of lignocellulosic biorefinery with Corynebacterium glutamicum, one of the critical pathway is to efficiently utilize pentose from hemicellulose. Corynebacterium glutamicum is widely used in amino acid and nucleotide industrial production. It can produce significant amount of amino acids even at steady phase, and can withstand growth inhibitors like furfurals, 5-hydroxymethylfurfural, which make it more suitable as a potent lignocellulose catalytic conversion biocatalyst. Research progress and strategy about xylose and arabinose utilizing genetic engineering C. glutamicum construction is reviewed, and the future research direction on optimization of pentose metabolic capabilities are also proposed.