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Radiation Biosensor Based on Promoter of SOS Reaction and Oxidative Stress Reaction |
HAO Xiao-ting,LIU Jun-jie,DENG Yu-lin,ZHANG Yong-qian() |
Beijing Key Laboratory for Separation and Analysis in Biomedicine and Pharmaceuticals, Life of Science, Beijing Institute of Technology, Beijing 100081, China |
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Abstract The radiation environment exists everywhere in the living space, the results of animal experiments in recent years show that the harm of electromagnetic radiation are mainly concentrated on nervous system toxicity, inducing tumors (especially brain tumors, leukemia) and reproductive system damage. Radiation exposure has the characteristics of wide-area, concealed and cumulative effect. It acts on living organisms, causing a large amount of reactive oxygen species (ROS) in cells. By-products of normal aerobic physiological metabolism in the cells can also generate free radicals, thereby causing damage to the body. In other words, radiation can not only directly act on biological molecules and cause damage to the body, but also indirectly act on the body by acting on biological water and so on to produce free radicals. In order to detect the magnitude of radiation toxicity quickly and easily, there been established radiation biosensors. Engineered bacteria sensors carrying SoxR, RecA, Cda and SulA four promoters and enhanced green fluorescent protein (EGFP) fusion gene related to SOS reaction and oxidative stress reaction were constructed, that is, the promoter-reporter system. First, the four biosensors were treated with chemical damage agents, they all expressed a large amount of green fluorescent protein after stimulation, and then γ-ray irradiation was performed. According to the treatment, the sensor with the highest sensitivity was the RecA promoter engineering bacteria sensor under radiation. The promoter-reporter fusion gene obtained by PCR and overlap PCR, and inserted into the vector PUC19, then transformed into E. coli DH5α. After double-enzyme digestion and sequencing verification, the successful engineered bacteria sensors were disposed of chemical oxidant and physical radiation. The results showed that the four engineering bacteria sensors successfully responded to the oxidant hydrogen peroxide and physical radiation, and the green fluorescence intensity gradually increased with the increase of physical radiation dose (0-30Gy). Among them, the green fluorescence of RecA engineered bacteria sensor was the most obvious after stimulation compared with the other sensors. The use of synthetic biology methods to establish physical radiation sensors based on biological effects successfully, with simple preparation, visibility of results, meeting fast, wide range, online monitoring needs, solving the problem of excessive background value in chemical sensors. It has a good application prospect in the measurement of radiation, radiation on the ground and even in the space.
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Received: 12 March 2019
Published: 13 August 2020
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Corresponding Authors:
Yong-qian ZHANG
E-mail: zyq@bit.edu.cn
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[1] |
Reuter S, Gupta S C, Chaturvedi M M, et al. Oxidative stress, inflammation, and cancer: How are they linked. Free Radical Biology and Medicine, 2010,49(11):1603-1616.
doi: 10.1016/j.freeradbiomed.2010.09.006
pmid: 20840865
|
|
|
[2] |
Christman M F, Morgan R W, Jacobson F S, et al. Positive control of a regulon for defenses against oxidative stress and some heat-shock proteins in Salmonella typhimurium. Cef J, 1985,41(3):753-762.
|
|
|
[3] |
Vickridge E, Planchenault C, Cockram C, et al. Management of E. coli sister chromatid cohesion in response to genotoxic stress. Nature Communications, 2017,8:14618.
doi: 10.1038/ncomms14618
pmid: 28262707
|
|
|
[4] |
Valko M, Izakovic M, Mazur M, et al. Role of oxygen radicals in DNA damage and cancer incidence. Molecular & Cellular Biochemistry, 2004,266(1-2):37-56.
doi: 10.1023/b:mcbi.0000049134.69131.89
pmid: 15646026
|
|
|
[5] |
James A I. The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium. Microbiology, 2013,7(11):443-454.
|
|
|
[6] |
Bouton C. Nitrosative and oxidative modulation of iron regulatory proteins. Cellular & Molecular Life Sciences Cmls, 1999,55(8-9):1043-1053.
doi: 10.1007/s000180050355
pmid: 10484662
|
|
|
[7] |
Pi J B, Zhang Q, Fu J Q, et al. ROS signaling, oxidative stress and Nrf2 in pancreatic beta-cell function. Toxicology and Applied Pharmacology, 2010,244(1):77-83.
doi: 10.1016/j.taap.2009.05.025
pmid: 19501608
|
|
|
[8] |
Pierrej S T, Buckingham J A, Roebucksj, et al. Topology of superoxide production from different sites in the mitochondrial electron transport chain. The Journal of Biological Chemistry, 2002,277(47):44784-44790.
doi: 10.1074/jbc.M207217200
pmid: 12237311
|
|
|
[9] |
Jomova K, Baros S, Valko M. Redox active metal-induced oxidative stress in biological systems. Transition Metal Chemistry, 2012,37(2):127-134.
doi: 10.1007/s11243-012-9583-6
|
|
|
[10] |
Klaunig J E, Wang Z, Pu X, et al. Oxidative stress and oxidative damage in chemical carcinogenesis. Toxicology and Applied Pharmacology, 2011,254(2):86-99.
doi: 10.1016/j.taap.2009.11.028
pmid: 21296097
|
|
|
[11] |
Barnes, Deborah E. DNA damage: air-breaks. Current Biology, 2002,12(7):262-264.
|
|
|
[12] |
Mccubrey J A, Lahair M M, Franklin R A. Reactive oxygen species-induced activation of the MAP kinase signaling pathways. Antioxidiants & Redox Signaling, 2006,8(9):1775-1789.
|
|
|
[13] |
Kanthasamy A G, Kitazawa M, Kanthasamy A, et al. Role of proteolytic activation of protein kinase Cδ in oxidative stress-induced apoptosis. Antioxidants &Redox Signaling, 2003,5(5):609-620.
doi: 10.1089/152308603770310275
pmid: 14580317
|
|
|
[14] |
Klaunig J E, Xu Y, Isenberg J S, et al. The role of oxidative stress in chemical carcinogenesis. Annual Review of Pharmacology & Toxicology, 1998,106(1):289-295.
|
|
|
[15] |
Janion C. Some aspects of the SOS response system: a critical survey. Acta Biochimica Polonica, 2001,48(3):599-610.
pmid: 11833768
|
|
|
[16] |
Rowe L A, Degtyareva N, Doetsch P W. DNA damage-induced reactive oxygen species (ROS) stress response in Saccharomyces cerevisiae. Free Radical Biology and Medicine, 2008,45(8):1167-1177.
doi: 10.1016/j.freeradbiomed.2008.07.018
pmid: 18708137
|
|
|
[17] |
Watanabe S, Kita A, Kobayashi K, et al. Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA. Proceedings of the National Academy of Sciences, 2008,105(11):4121-4126.
|
|
|
[18] |
Gaudu P, Moon N, Weiss B. Regulation of the soxRS oxidative stress regulon: reversible oxidation of the Fe±S centers of SoxR in vivo. J Biol Chem, 1997,272(8):5082-5086.
pmid: 9030573
|
|
|
[19] |
Park S J, Chung H Y, Lee J H. Rapid in vivo screening system for anti-oxidant activity using bacterial redox sensor strains. Journal of Applied Microbiology, 2010,108(4):1217-1225.
doi: 10.1111/j.1365-2672.2009.04514.x
pmid: 19761460
|
|
|
[20] |
邓名荣, 朱红惠, 郭俊. 转录因子SoxR的结构、调控机制及生理功能. 微生物学报, 2010,50(12):1575-1582.
pmid: 21365909
|
|
|
[20] |
Deng M R, Zhu H H, Guo J. The structure, regulation mechanism and physiological function of transcription factor SoxR. Acta Microbiologica Sinica, 2010,50(12):1575-1582.
pmid: 21365909
|
|
|
[21] |
HerreraLópez E J. Lipase and phospholipase biosensors: a review. Methods Mol Biol, 2012,861(30):525-543.
|
|
|
[22] |
Touati D. Sensing and protecting against superoxide stress in Escherichia coli: how many ways are there to trigger SoxRS response. Redox Report, 2017,5(5):287-293.
doi: 10.1179/135100000101535825
pmid: 11145103
|
|
|
[23] |
Dahl R H, Zhang F, Alonsogutierrez J, et al. Engineering dynamic pathway regulation using stress-response promoters. Nature Biotechnology, 2013,31(11):1039-1046.
pmid: 24142050
|
|
|
[24] |
Behzadian F, Barjeste H, Hosseinkhani S, et al. Construction and characterization of Escherichia coli whole-cell biosensors for toluene and related compounds. Current Microbiology, 2011,62(2):690-696.
doi: 10.1007/s00284-010-9764-5
pmid: 20872219
|
|
|
[25] |
郭书巧, 徐鹏, 倪万潮. 细菌的氧化应激及基因表达调控. 生物技术通报, 2008,4(3):8-11.
|
|
|
[25] |
Guo S Q, Xu P, Ni W C. Oxidative stress in bacteria and regulation of gene expression. Biotechnology Bulletin, 2008,4(3):8-11.
|
|
|
[26] |
Tang S Y, Cirino P C. Design and application of a mevalonate-responsive regulatory protein. Angewandte Chemie, 2011,50(5):1084-1086.
pmid: 21268200
|
|
|
[27] |
Bartek J, Lukas J. DNA damage checkpoints: from initiation to recovery or adaptation. Current Opinion in Cell Biology, 2007,19(2):238-245.
doi: 10.1016/j.ceb.2007.02.009
pmid: 17303408
|
|
|
[28] |
Harrison J C, Haber J E. Surviving the breakup: the dna damage checkpoint. Annual Review of Genetics, 2006,40(1):209-235.
doi: 10.1146/annurev.genet.40.051206.105231
|
|
|
[29] |
Dietrich J A, Shis D L, Alikhani A, et al. Transcription factor:based screens and synthetic selections for microbial small-molecule biosynthesis. Acs Synthetic Biology, 2013,2(1):47-58.
doi: 10.1021/sb300091d
pmid: 23656325
|
|
|
[30] |
Liu J, Ehmsen K T, Heyer W D, et al. Presynaptic filament dynamics in homologous recombination and DNA repair. Critical Reviews in Biochemistry and Molecular Biology, 2011,46(3):240-270.
doi: 10.3109/10409238.2011.576007
|
|
|
[31] |
Tang S Y, Qian S, Akinterinwa O, et al. Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter. Journal of the American Chemical Society, 2013,135(27):10099-10103.
doi: 10.1021/ja402654z
pmid: 23786422
|
|
|
[32] |
Farmer W R, Liao J C. Improving lycopene production in Escherichia coli by engineering metabolic control. Nature Biotechnology, 2000,18(5):533-537.
doi: 10.1038/75398
pmid: 10802621
|
|
|
[33] |
Massa P E, Paniccia A, Monegal A, et al. Salmonella engineered to express CD 20-targeting antibodies and a drug-converting enzyme can eradicate human lymphomas. Blood, 2013,122(5):705-714.
doi: 10.1182/blood-2012-12-474098
|
|
|
[34] |
Karube I, Matsunaga T, Mitsuda S, et al. Microbial electrode BOD sensors. Biotechnology and Bioengineering, 1977,19(10):1535-1547.
doi: 10.1002/bit.260191010
pmid: 901931
|
|
|
[35] |
Bousse L. Whole cell biosensors. Sensors & Actuators B Chemical, 1996,34(1-3):270-275.
|
|
|
[36] |
Saeidi N, Wong C K, Lo T M, et al. Engineering microbes to sense and eradicate pseudomonas aeruginosa, a human pathogen. Molecular Systems Biology, 2011,7(1):521-521.
doi: 10.1038/msb.2011.55
|
|
|
[37] |
Waters C M, Bassler B L. Quorum sensing: cell-to-cell communication in bacteria. Cell and Developmental Biology, 2005,21(21):319-346.
doi: 10.1146/annurev.cellbio.21.012704.131001
|
|
|
[38] |
Kobayashi H, Kaern M, Araki M, et al. Programmable cells: interfacing natural and engineered gene networks. Proceedings of the National Academy of Sciences, 2004,101(22):8414-8419.
|
|
|
[39] |
Mono?ík R, Streansky M, ?turdík E. Biosensors-classification, characterization and new trends. Acta Chimica Slovaca, 2012,5(1):109-120.
doi: 10.2478/v10188-012-0017-z
|
|
|
[40] |
Chen P T, Shaw J F, Chao Y P, et al. Construction of chromosomally located T7 expression system for production of heterologous secreted proteins in bacillus subtilis. Journal of Agricultural & Food Chemistry, 2010,58(9):5392-5399.
doi: 10.1021/jf100445a
pmid: 20377228
|
|
|
[41] |
Michener J K, Thodey K, Liang J C, et al. Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways. Metabolic Engineering, 2012,14(3):212-222.
doi: 10.1016/j.ymben.2011.09.004
pmid: 21946159
|
|
|
[42] |
Gardner T S, Cantor C R, Collins J. Construction of a genetic toggle switch in Escherichia coli. Nature, 2000,403(6767):339.
doi: 10.1038/35002131
pmid: 10659857
|
|
|
[43] |
Schoket B, Doty W A, Vincze I, et al. Increased sensitivity for determination of polycyclic aromatic hydrocarbon-DNA adducts in human DNA samples by dissociation-enhanced lanthanide fluoroimmunoassay (DELFIA). Cancer Epidemiology Biomarkers & Prevention, 1993,2(4):349-353.
|
|
|
[44] |
Feng F, Yin J, Song M, et al. Preparation, identification and analysis of stereoisomeric anti-benzo[a]pyrene diol epoxide-deoxyguanosine adducts using phenyl liquid chromatography with diode array, fluorescence and tandem mass spectrometry detection. Journal of Chromatography A, 2008,1183(1-2):119-128.
doi: 10.1016/j.chroma.2008.01.018
pmid: 18243229
|
|
|
[45] |
宋道军, 李红, 余增亮. N+离子注入对不同辐射敏感性微生物超氧化物歧化酶(SOD)、过氧化氢酶(CAT)和过氧化物酶(POD)活性的影响 . 生物物理学报, 1998,2(14):325-330.
|
|
|
[45] |
Song D J, Li H, Yu Z L. Effects of N+ ion implantation on the activities of superoxide dismutase (SOD), catalase(CAT) and peroxidase (POD) in different radiation-sensitive microorganisms . Acta Biophysica Sinica, 1998,2(14):325-330.
|
|
|
[46] |
Santella R M. Immunological methods for detection of carcinogen-DNA damage in humans. Cancer Epidemiology Biomarkers & Prevention, 1999,8(3):733-739.
|
|
|
[47] |
Liao V H C, Ou K L. Development and testing of a green fluorescent protein-based bacterial biosensor for measuring bioavailable arsenic in contaminated groundwater samples. Environmental Toxicology and Chemistry, 2005,24(7):1624-1631.
doi: 10.1897/04-500r.1
pmid: 16050578
|
|
|
[48] |
宋凯. 合成生物学导论. 第2版. 北京: 科学出版社, 2010.
|
|
|
[48] |
Song K. Introdution to synthetic biology. 2nd ed. Beijing: Science Press, 2010.
|
|
|
[49] |
Fuqua W C, Winans S C, Greenberg E P. Quorum sensing in bacteria: the LuxR - LuxI family of cell density-responsive transcriptional regulators. Journal of Bacteriology, 1994,176(2):269-275.
doi: 10.1128/jb.176.2.269-275.1994
pmid: 8288518
|
|
|
[50] |
Wellhausen R, Oye K A. Intellectual property and the commons in synthetic biology: strategies to facilitate an emerging technology. Conference on Science, Technology & Innovation Policy. IEEE, 2008.
|
|
|
[51] |
Rutherford S T, Bassler B L. Bacterial quorum sensing: its role in virulence and possibilities for its control. Technology// Science, Technology and Innovation Policy, 2007 Atlanta Conference on. IEEE, 2007.
|
|
|
[52] |
Kotula J W, Kerns S J, Shaket L A, et al. Programmable bacteria detect and record an environmental signal in the mammalian gut. Proceedings of the National Academy of Sciences of the United States of America, 2014,111(13):4838-4843.
|
|
|
[53] |
Tsao C Y, Hooshangi S, Wu H C, et al. Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. Metabolic Engineering, 2010,12(12):291-297.
doi: 10.1016/j.ymben.2010.01.002
|
|
|
[54] |
Chen Z, Lu M, Zhuang G, et al. Enhanced bacterial biosensor for fast and sensitive detection of oxidatively DNA damaging agents. Analytical Chemistry, 2011,83(9):3248-3251.
doi: 10.1021/ac200426x
|
|
|
|
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