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MicroRNA Cluster 290-295 Enhances Somatic Cell Reprogramming |
ZHU Si-ying1,2,YANG Yang2,LI Peng-dong2,XUE Yan-ting3,SHE Qin2,QI Ling2,ZHAO Guo-jun2,**(),LIAO Bao-jian2,3,**() |
1. College of Pharmacy, Dali University, Dali 671000, China 2. The Sixth Affiliated Hospital of Guangzhou Medical University, Qingyuan 511518, China 3. Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou 510530, China |
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Abstract Objective: To explore the effect of miR-290-295, the most abundantly expressed microRNA cluster in stem cells, as a whole on somatic cell reprogramming. Methods: The miR-290-295 cluster was overexpressed into mouse somatic cells using retroviral vectors to explore whether it promotes the reprogramming of somatic cells into induced pluripotent stem cells (iPSCs) and the effect on cell function through this process. Results: The overexpression of miR-290-295 cluster could significantly improve the efficiency of mouse somatic cell reprogramming in the traditional induction system of three factors (Sox2, Klf4 and Oct4). Overexpression of miR-290-295 cluster could not only promote the up-regulation of pluripotency marker genes and the down-regulation of somatic marker genes during reprogramming, but also the expression of mesenchymal-epithelial transition (MET) marker genes and cell proliferation related genes. Conclusion: miR-290-295 promotes the reprogramming of mouse somatic cells. Our findings are helpful to understand the RNA regulatory mechanism in stem cell pluripotency and reprogramming, and provide a new perspective for the development of new induction systems.
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Received: 03 November 2022
Published: 04 May 2023
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[1] |
Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell, 2006, 126(4): 663-676.
doi: 10.1016/j.cell.2006.07.024
pmid: 16904174
|
|
|
[2] |
Li L P, Chen K S, Wang T Y, et al. Glis1 facilitates induction of pluripotency via an epigenome-metabolome-epigenome signalling cascade. Nature Metabolism, 2020, 2(9): 882-892.
doi: 10.1038/s42255-020-0267-9
pmid: 32839595
|
|
|
[3] |
Liao B J, Bao X C, Liu L Q, et al. MicroRNA cluster 302-367 enhances somatic cell reprogramming by accelerating a mesenchymal-to-epithelial transition. Journal of Biological Chemistry, 2011, 286(19): 17359-17364.
doi: 10.1074/jbc.C111.235960
pmid: 21454525
|
|
|
[4] |
Esteban M A, Wang T, Qin B M, et al. Vitamin C enhances the generation of mouse and human induced pluripotent stem cells. Cell Stem Cell, 2010, 6(1): 71-79.
doi: 10.1016/j.stem.2009.12.001
pmid: 20036631
|
|
|
[5] |
Hou P P, Li Y Q, Zhang X, et al. Pluripotent stem cells induced from mouse somatic cells by small-molecule compounds. Science, 2013, 341(6146): 651-654.
doi: 10.1126/science.1239278
pmid: 23868920
|
|
|
[6] |
Wang J, Yu H P, Ma Q, et al. Phase separation of OCT 4 controls TAD reorganization to promote cell fate transitions. Cell Stem Cell, 2021, 28(10): 1868-1883, e11.
doi: 10.1016/j.stem.2021.04.023
pmid: 34038708
|
|
|
[7] |
Ying Z F, Xiang G, Zheng L J, et al. Short-term mitochondrial permeability transition pore opening modulates histone lysine methylation at the early phase of somatic cell reprogramming. Cell Metabolism, 2018, 28(6): 935-945, e5.
doi: S1550-4131(18)30502-3
pmid: 30174306
|
|
|
[8] |
Wu Y, Chen K S, Xing G S, et al. Phospholipid remodeling is critical for stem cell pluripotency by facilitating mesenchymal-to-epithelial transition. Science Advances, 2019, 5(11): eaax7525.
doi: 10.1126/sciadv.aax7525
|
|
|
[9] |
Yang Y, Liu B, Xu J, et al. Derivation of pluripotent stem cells with in vivo embryonic and extraembryonic potency. Cell, 2017, 169(2): 243-257, e25.
doi: S0092-8674(17)30183-6
pmid: 28388409
|
|
|
[10] |
Xiang C G, Du Y Y, Meng G F, et al. Long-term functional maintenance of primary human hepatocytes in vitro. Science, 2019, 364(6438): 399-402.
doi: 10.1126/science.aau7307
|
|
|
[11] |
Pei D Q, Beier D W, Levy-Lahad E, et al. Human embryo editing: opportunities and importance of transnational cooperation. Cell Stem Cell, 2017, 21(4): 423-426.
doi: S1934-5909(17)30377-6
pmid: 28985523
|
|
|
[12] |
Gao X F, Nowak-Imialek M, Chen X, et al. Establishment of porcine and human expanded potential stem cells. Nature Cell Biology, 2019, 21(6): 687-699.
doi: 10.1038/s41556-019-0333-2
pmid: 31160711
|
|
|
[13] |
Guan J Y, Wang G, Wang J L, et al. Chemical reprogramming of human somatic cells to pluripotent stem cells. Nature, 2022, 605(7909): 325-331.
doi: 10.1038/s41586-022-04593-5
|
|
|
[14] |
Geekiyanage H, Rayatpisheh S, Wohlschlegel J A, et al. Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides. Proceedings of the National Academy of Sciences of the United States of America, 2020, 117(39): 24213-24223.
|
|
|
[15] |
Barwari T, Joshi A, Mayr M. MicroRNAs in cardiovascular disease. Journal of the American College of Cardiology, 2016, 68(23): 2577-2584.
doi: S0735-1097(16)36537-8
pmid: 27931616
|
|
|
[16] |
Choi J, Kim Y K, Park K, et al. MicroRNA-139-5p regulates proliferation of hematopoietic progenitors and is repressed during BCR-ABL-mediated leukemogenesis. Blood, 2016, 128(17): 2117-2129.
pmid: 27605510
|
|
|
[17] |
Wang Y, Yang Z F, Le W D. Tiny but mighty: promising roles of microRNAs in the diagnosis and treatment of parkinson’s disease. Neuroscience Bulletin, 2017, 33(5): 543-551.
doi: 10.1007/s12264-017-0160-z
|
|
|
[18] |
Schweiger V, Hasimbegovic E, Kastner N, et al. Non-coding RNAs in stem cell regulation and cardiac regeneration: current problems and future perspectives. International Journal of Molecular Sciences, 2021, 22(17): 9160.
doi: 10.3390/ijms22179160
|
|
|
[19] |
Coradduzza D, Cruciani S, Arru C, et al. Role of miRNA-145, 148, and 185 and stem cells in prostate cancer. International Journal of Molecular Sciences, 2022, 23(3): 1626.
doi: 10.3390/ijms23031626
|
|
|
[20] |
Cao J Y, Wang B, Tang T T, et al. Exosomal miR-125b-5p deriving from mesenchymal stem cells promotes tubular repair by suppression of p 53 in ischemic acute kidney injury. Theranostics, 2021, 11(11): 5248-5266.
doi: 10.7150/thno.54550
|
|
|
[21] |
Zhu J J, Yang S H, Qi Y D, et al. Stem cell-homing hydrogel-based miR-29b-5p delivery promotes cartilage regeneration by suppressing senescence in an osteoarthritis rat model. Science Advances, 2022, 8(13): eabk0011.
doi: 10.1126/sciadv.abk0011
|
|
|
[22] |
Lee K S, Lee J, Kim H K, et al. Extracellular vesicles from adipose tissue-derived stem cells alleviate osteoporosis through osteoprotegerin and miR-21-5p. Journal of Extracellular Vesicles, 2021, 10(12): e12152.
|
|
|
[23] |
Li M A, He L. MicroRNAs as novel regulators of stem cell pluripotency and somatic cell reprogramming. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, 2012, 34(8): 670-680.
doi: 10.1002/bies.v34.8
|
|
|
[24] |
Xue Y C, Ouyang K F, Huang J, et al. Direct conversion of fibroblasts to neurons by reprogramming PTB-regulated microRNA circuits. Cell, 2013, 152(1-2): 82-96.
doi: 10.1016/j.cell.2012.11.045
pmid: 23313552
|
|
|
[25] |
Schaefer M, Nabih A, Spies D, et al. Global and precise identification of functional miRNA targets in mESCs by integrative analysis. EMBO Reports, 2022, 23(9): e54762.
|
|
|
[26] |
Liu Z M, Wang J, Li G, et al. Structure of precursor microRNA’s terminal loop regulates human Dicer’s dicing activity by switching DExH/D domain. Protein & Cell, 2015, 6(3): 185-193.
|
|
|
[27] |
Shi M, Hao J, Wang X W, et al. Functional dissection of pri-miR-290- 295 in Dgcr8 knockout mouse embryonic stem cells. International Journal of Molecular Sciences, 2019, 20(18): 4345.
doi: 10.3390/ijms20184345
|
|
|
[28] |
Gu K L, Zhang Q, Yan Y, et al. Pluripotency-associated miR-290/ 302 family of microRNAs promote the dismantling of naive pluripotency. Cell Research, 2016, 26(3): 350-366.
doi: 10.1038/cr.2016.2
|
|
|
[29] |
Chen C F, Ridzon D A, Broomer A J, et al. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Research, 2005, 33(20): e179.
doi: 10.1093/nar/gni178
pmid: 16314309
|
|
|
[30] |
Samavarchi-Tehrani P, Golipour A, David L, et al. Functional genomics reveals a BMP-driven mesenchymal-to-epithelial transition in the initiation of somatic cell reprogramming. Cell Stem Cell, 2010, 7(1): 64-77.
doi: 10.1016/j.stem.2010.04.015
pmid: 20621051
|
|
|
[31] |
Li Z H, Yang C S, Nakashima K, et al. Small RNA-mediated regulation of iPS cell generation. The EMBO Journal, 2011, 30(5): 823-834.
doi: 10.1038/emboj.2011.2
|
|
|
[32] |
Li S J, Lei Z X, Sun T L. The role of microRNAs in neurodegenerative diseases: a review. Cell Biology and Toxicology, 2023, 39:53-83.
doi: 10.1007/s10565-022-09761-x
|
|
|
[33] |
Tang F C, Barbacioru C, Bao S Q, et al. Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-seq analysis. Cell Stem Cell, 2010, 6(5): 468-478.
doi: 10.1016/j.stem.2010.03.015
pmid: 20452321
|
|
|
[34] |
Yang Q Y, Lin J M, Liu M, et al. Highly sensitive sequencing reveals dynamic modifications and activities of small RNAs in mouse oocytes and early embryos. Science Advances, 2016, 2(6): e1501482.
|
|
|
[35] |
Medeiros L A, Dennis L M, Gill M E, et al. MiR-290-295 deficiency in mice results in partially penetrant embryonic lethality and germ cell defects. Proceedings of the National Academy of Sciences of the United States of America, 2011, 108(34): 14163-14168.
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