|
|
Screening and Inhibition Kinetics of SARS Coronavirus Main Protease Inhibitors |
ZHU Yun-peng1,2, WANG Peng2, XIA Bo-ran1, TANG Yan-ting2, WANG Quan2 |
1. College of Biological Engineering, Tianjin University of Science and Technology, Tianjin 300457, China;
2. Tianjin International Joint Academy of Biomedicine, Tianjin 300457, China |
|
|
Abstract Heterologous recombinant expression and purification of SARS coronavirus main protease (SARS-CoV Mpro) , Then utilized it as the target, used drug screening model in vitro based on fluorescence resonance energy transfer (FRET), evaluated inhibition activity of 96 compounds from the protease inhibitor focused library, and explored the inhibition of compounds to SARS-CoV Mpro from the perspective of kinetics. The result show that 5 compounds are obtained of which inhibition rate >80%, quenching rate <20% by screened, they are P-1-08,P-1-19,P-2-24,P-2-28 and P-2-54. Their half effective inhibitory concentration (IC50) are 0.69±0.05μmol/L、1.19±0.41μmol/L、0.14±0.01μmol/L、1.36±0.07μmol/L、0.36±0.03μmol/L, respectively. The inhibition of P-1-08, P-1-19, P-2-24 and P-2-54 to SARS-CoV Mpro is irreversible. P-2-28 is reversible inhibition, according to Dixon diagram and Lineweaver-Burk curve found it is competitive inhibition for SARS-CoV Mpro, the inhibition constant Ki is 0.81μmol/L. Through the study about relationship of substrate concentration, IC50 and Ki, validated P-2-28 was competitive inhibition. The discovery of this inhibitor set up the foundation of resource to SARS-CoV Mpro inhibitors, and provided a lead compound for the development of anti-SARS virus drug.
|
Received: 21 October 2015
Published: 09 December 2015
|
|
|
|
[1] WHO.Cumulative number of reported cases(SARS).http://www.who.int/csr/sars/country/table2004-04-21/en/index.html.
[2] WHO.Cumulative number of reported cases of severe acute respiratory syndrome (SARS). (2003-05-31) .
[3] Rolf Hilgenfeld, Malik Peiris. From SARS to MERS: 10 years of research on highly pathogenic human coronaviruses. Antiviral Research, 2013,100(1):286-295.
[4] Chen Y, Cai H, Pan J, et al. Functional screen reveals SARS coronavirus nonstructural protein nsp14 as a novel cap N7 methyltransferase. PNAS, 2009,106 (9): 3484-3489.
[5] Liang G,Chen Q,Xu J,et al.Laboratory diagnosis of four recent sporadic cases of community-acquired SARS, Guangdong Province. China Emerg Infect Dis, 2004,10(10):1774-1781.
[6] 唐小龙,江振友,林晨,等. SARS相关冠状病毒的基因组和主要蛋白酶的研究进展.第二军医大学学报,2004,25(3):272-276. Tang X L,Jiang Z Y,Lin C,et al. Progress about genome and main protease of the SARS-associated coronavirus. Second Military Medical University, 2004, 25(3):272-276.
[7] Rota P A,Oberste M S, Monroe S S, et al. Characterization of a novel coronavirus association with severe acute respiratory syndrome.Science,2003,300(5626):1394-1399.
[8] Yang H,Bartlam M, Rao Z. Drug design targeting the main proteinase,the Achilles'heel of coronavirus. Curr Pharm Design, 2006, 12(35):4573-4590.
[9] Allaire M,Chernaia M M,Malcolm B A. Picornaviral 3C cysteine proteinases have a fold similar to chymotrypsin-serine proteinases. Nature, 1994, 369(6475):72-78.
[10] Young-Sam Keum, Yong-Joo Jeong. Development of chemical inhibitors of the SARS coronavirus: Viral helicase as a potential target. Biochemical Pharmacology, 2012,84(10):1351-1358.
[11] Anand K, Ziebuhr J, Wadhwani P, et al.Coronavirus main proteinase(3CL pro)structure:basis for design of anti-SARS drug. Science, 2003, 300(5626):1763-1767.
[12] Pillaiyar Thanigaimalai, Sho Konno, Takehito Yamamoto, et al. Design, synthesis, and biological evaluation of novel dipeptide-type SARS-CoV 3CL protease inhibitors: Structure-activity relationship study. European Journal of Medicinal Chemistry, 2013,65:436-447.
[13] Wu C Y, Jan J T, Ma S H, et al. Small molecules targeting severe acute respiratory syndrome human coronavirus. Proc Natl Acad Sci USA, 2004,101(27):10012-10017.
[14] Bacha U, Barrila J ,Velazquez-campoy A, et al. Identification of novel inhibitors of the SARS coronavirusmain proteinase. Biochemistry, 2004,43(17):4906-4912.
[15] Jon Jacobs, Valerie Grum-Tokars, Ya Zhou, et al. Discovery, synthesis, and structure-based optimization of a series of N-(tert-Butyl)-2-(N-arylamido)-2-(pyridin-3-yl) acetamides (ML188) as potent noncovalent small molecule inhibitors of the SARS-CoV 3CL protease. Med Chem, 2013, 56 (2):534-546.
[16] Young Bae Ryu, Su-Jin Park, Young Min Kim, et al. SARS-CoV 3CLpro inhibitory effects of quinone-methide triterpenes from Tripterygium regelii. Bioorganic & Medicinal Chemistry Letter, 2010,20:1873-1876.
[17] 黄熙泰. 现代生物化学. 第3版. 北京:化学工业出版社,2006. 117-125. Huang X T. Modern Biochemistry. 3rd ed. Beijing: Chemical Industry Press, 2006. 117-125.
[18] 沈同,王镜岩. 生物化学. 第3版. 北京:高等教育出版社,2002.368-372. Shen T, Wang J Y. Biochemistry. 3rd ed. Beijing: Higher Education Press, 2002. 368-372.
[19] Yung-chi Cheng, William H Prusoff. Relationship between the inhibition constant(Ki) and the concentration of inhibitor which causes 50 percent inhibition(I50) of an enzymatic reaction. Biochemical Pharmacology, 1973, 22:3099-3108. |
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|