|
|
High Splicing Activity of Ter DnaE-3 Mini-intein through Directed Evolution |
XUN Qi-jing, LIN Ying, QIU Pei-ran, MENG Qing |
Institute of Biological Sciences and Biotechnology, Donghua University, Shanghai 201620, China |
|
|
Abstract Natural and artificially engineered inteins have been more widely used in the field of protein engineering. However, inteins are often inactive when cloned into a heterologous host protein, and also need the presence of the native exteins, which would be left in the target protein. Inteins should overcome these limitations. In order to improve splicing activity of Ter DnaE-3 (Trichodesmium erythraeum) mini-intein in heterologous host, random mutagenesis was based on error PCR by change the concentration of dNTP、Mg2+、Mn2+, and then mutants were screened in kanamycin resistance-dependent system. After directed evolution, mutant 5th increased splicing activity from ~20% to ~85%, and mutant 9th can avoid occurring cleavage compared with other mutants by western blot analysis. The relationship of amino acid mutations and splicing activity showed that amino acids involved in the formation of α-helix structure may influence intein cleavage reaction, and amino acids involved in the formation of β-sheet structure may provide some help for intein structure. The resulting improved inteins showed high activity in heterologous host, which verify the kanamycin resistance-dependent system feasibility and expand intein application.
|
Received: 30 December 2011
Published: 25 May 2012
|
|
|
|
[1] Perler F B, Davis E O, Dean G E, et al. Protein splicing elements: inteins and exteins-a definition of terms and recommended nomenclature. Nucleic Acids Res, 1994, 22(7): 1125-1127.
[2] Perler F B. InBase: the Intein Database. Nucleic Acids Res, 2002, 30(1): 383-384.
[3] Perler F B. Protein splicing of inteins and hedgehog autoproteolysis: structure, function, and evolution. Cell, 1998, 92(1): 1-4.
[4] Liu X Q. Protein-splicing intein: Genetic mobility, origin, and evolution. Annu Rev Genet, 2000, 34: 61-76.
[5] Saleh L, Perler F B. Protein splicing in cis and in trans. Chem Rec, 2006, 6(4): 183-193.
[6] Mills K V, Perler F B. The mechanism of intein-mediated protein splicing: variations on a theme. Protein Pept Lett, 2005, 12(8): 751-755.
[7] Muir T W, Sondhi D, Cole P A. Expressed protein ligation: a general method for protein engineering. Proc Natl Acad Sci USA, 1998, 95(12): 6705-6710.
[8] Ludwig C, Pfeiff M, Linne U, et al. Ligation of a synthetic peptide to the N terminus of a recombinant protein using semisynthetic protein trans-splicing. Angew Chem Int Ed Engl, 2006, 45(31): 5218-5221.
[9] Vila-Perello M, Muir T W. Biological Applications of Protein Splicing. Cell, 2010, 143: 191-200.
[10] Mills K V, Lew B M, Jiang S, et al. Protein splicing in trans by purified N- and C-terminal fragments of the Mycobacterium tuberculosis RecA intein. Proc Natl Acad Sci USA, 1998, 95(7): 3543-3548.
[11] Ludwig C, Schwarzer D, Mootz H D. Interaction studies and alanine scanning analysis of a semi-synthetic split intein reveal thiazoline ring formation from an intermediate of the protein splicing reaction. J Biol Chem, 2008, 283(37): 25264-25272.
[12] 林瑛,周倩,荀启静,等. 高剪接活性断裂蛋白质内含子的体内切割. 中国生物工程杂志, 2011, 31(8): 97-101. Lin Y, Zhou Q, Qun Q J, et al. Cleavage of Split-Inteins with High Splicing Activity. China Biotechnology, 2011, 31(8): 97-101.
[13] 周倩,孟清. 异源生物中筛选高剪接活性Intein系统的建立. 中国生物化学与分子生物学报, 2009, 25(3): 282-286. Zhou Q, Meng Q. An Efficient Screening System of Active Intein in Heterologous Hosts. Chinese Journal of Biochemistry and Molecular Biology, 2009, 25(3): 282-286.
[14] 李曼,孟清. 易错PCR/卡那霉素筛选系统定向进化蛋白质内含子:中国,C12N15/65. 2011-10-05. Li M, Meng Q. Error prone PCR/Kanamycin directed evolution system for improving inteins: China, C12N15/65. 2011-10-05.
[15] Oeemig J S, Aranko A S, Djupsjobacka J, et al. Solution structure of DnaE intein from Nostoc punctiforme: structural basis for the design of a new split intein suitable for site-specific chemical modification. FEBS Lett, 2009, 583(9): 1451-1456.
[16] Appleby-Tagoe J H, Thiel I V, Wang Y, et al. Highly efficient and more general cis- and trans-splicing intein through sequential directed evolution. J Biol Chem, 2011, 286(39):34440–34447.
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|