综述 |
|
|
|
|
分枝杆菌噬菌体重组系统及其应用 |
樊祥宇, 谢建平 |
西南大学生命科学学院 三峡库区生态环境与生物资源省部共建国家重点实验室培育基地 现代生物医药研究所 重庆 400715 |
|
Recombineering Based on Mycobacteriophage and Its Application |
FAN Xiang-yu, XIE Jian-ping |
Institute of Modern Biopharmaceuticals, State Key Laboratory Breeding Base of Eco-Enviroment and Bio-Resource of the Three Gorges Area, School of Life Sciences, Southwest University, Chongqing 400715, China |
[1] Court D L, Sawitzke J A, Thomason L C.Genetic engineering using homologous recombination. Annu Rev Genet, 2002,36:361-388. [2] Copeland N G, Jenkins N A, Court D L. Recombineering: a powerful new tool for mouse functional genomics. Nat Rev Genet, 2001,2(10): 769-779. [3] Sarov M, Schneider S, Pozniakovski A, et al. A recombineering pipeline for functional genomics applied to Caenorhabditis elegans. Nat Methods, 2006,3(10): 839-844. [4] Yu D, Ellis H, Lee E. An efficient recombination system for chromosome engineering in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America, 2000,97(11): 5978. [5] Ellis H, Yu D, DiTizio T. High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides. Proceedings of the National Academy of Sciences of the United States of America, 2001,98(12): 6742. [6] 张雪, 温廷益. Red重组系统用于大肠杆菌基因修饰研究进展. 中国生物工程杂志, 2008, 28(12): 89-93. Zhang X, Wen T Y. Advances of red recombination system in Escherichia coli gene modification. China Biotechnology, 2008, 28(12): 89-93. [7] Datta S, Costantino N, Zhou X. Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages. Proceedings of the National Academy of Sciences, 2008,105(5): 1626. [8] Bouchard J, Moineau S. Homologous recombination between a lactococcal bacteriophage and the chromosome of its host strain. Virology, 2000,270(1): 65-75. [9] Bae T, Baba T, Hiramatsu K, et al. Prophages of Staphylococcus aureus Newman and their contribution to virulence. Molecular Microbiology, 2006,62(4): 1035-1047. [10] Loessner M, Inman R, Lauer P, et al. Complete nucleotide sequence, molecular analysis and genome structure of bacteriophage A118 of Listeria monocytogenes: implications for phage evolution. Molecular Microbiology, 2000,35(2): 324-340. [11] Lüneberg E, Mayer B, Daryab N, et al Chromosomal insertion and excision of a 30 kb unstable genetic element is responsible for phase variation of lipopolysaccharide and other virulence determinants in Legionella pneumophila. Molecular Microbiology, 2001,39(5): 1259-1271. [12] Van Kessel J, Hatfull G. Recombineering in Mycobacterium tuberculosis. Nature Methods, 2006,4(2): 147-152. [13] Murphy K C. Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli. J Bacteriol, 1998,180(8): 2063-2071. [14] Muyrers J P, Zhang Y, Buchholz F, et al. RecE/RecT and Redalpha/Redbeta initiate double-stranded break repair by specifically interacting with their respective partners. Genes Dev, 2000,14(15): 1971-1982. [15] Iyer L M, Koonin E V, Aravind L. Classification and evolutionary history of the single-strand annealing proteins, RecT, Redbeta, ERF and RAD52. BMC Genomics, 2002,3(1): 8. [16] Zhang Y, Buchholz F, Muyrers J P, et al. A new logic for DNA engineering using recombination in Escherichia coli. Nat Genet, 1998,20(2): 123-128. [17] Jacobs W, Tuckman M, Bloom B. Introduction of foreign DNA into mycobacteria using a shuttle phasmid, 1987,327(6122):532-535. [18] Hatfull G. Mycobacteriophages: Genes and genomes. Annual Review of Microbiology, 2010,64:331-356. [19] Pedulla M, Ford M, Houtz J, et al. Origins of highly mosaic mycobacteriophage genomes. Cell, 2003,113(2): 171-182. [20] Hatfull G, Pedulla M, Jacobs-Sera D, et al. Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform. PLoS Genet, 2006,2(6): e92. [21] Van Kessel J, Marinelli L, Hatfull G. Recombineering mycobacteria and their phages. Nature Reviews Microbiology, 2008,6(11): 851-857. [22] Hill F, Benes V, Thomasova D, et al. BAC Trimming: Minimizing Clone Overlaps. Genomics, 2000,64(1): 111-113. [23] Gay P, Le Coq D, Steinmetz M, et. Cloning structural gene sacB, which codes for exoenzyme levansucrase of Bacillus subtilis: expression of the gene in Escherichia coli. Journal of Bacteriology, 1983,153(3): 1424. [24] Oppenheim A, Rattray A, Bubunenko M, et al. In vivo recombineering of bacteriophage by PCR fragments and single-strand oligonucleotides. Virology, 2004,319(2): 185-189. [25] Lee E. A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA. Genomics, 2001,73(1): 56-65. |
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|