| 综述 |
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| 蛋白片段互补分析技术研究进展 |
| 黄欣媛1, 范红波2, 邹礼平1 |
1 湖北工程学院 特色果蔬质量安全控制湖北省重点实验室 孝感 432000;
2 湖北职业技术学院 孝感 432000 |
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| Progress in Protein Fragment Complementation Assay |
| HUANG Xin-yuan1, FAN Hong-bo2, ZOU Li-ping1 |
1. Hubei Key Laboratory of Quality Control of Characteristic Fruits and Vegetables, Hubei Engineering University, Xiaogan 432000, China;
2. Hubei Polytechnic Institute, Xiaogan 432000, China |
[1] Chen Y, Li S, Chen T, et al. Random dissection to select for protein split sites and its application in protein fragment complementation. Protein Sci, 2009, 18(2): 399-409.
[2] Morell M, Espargaro A, Aviles F X, et al. Detection of transient protein-protein interactions by bimolecular fluorescence complementation: the Abl-SH3 case. Proteomics, 2007, 7(7): 1023-1036.
[3] Morell M, Ventura S, Avilés F X. Protein complementation assays: Approaches for the in vivo analysis of protein interactions. FEBS Letters, 2009, 583(11): 1684-1691.
[4] Johnsson N, Varshavsky A. Split ubiquitin as a sensor of protein interactions in vivo. Proc Natl Acad Sci U S A, 1994, 91(22): 10340-10344.
[5] Stagljar I, Korostensky C, Johnsson N, et al. A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo. Proc Natl Acad Sci U S A, 1998, 95(9): 5187-5192.
[6] Miller J P, Lo R S, Ben-Hur A, et al. Large-scale identification of yeast integral membrane protein interactions. Proc Natl Acad Sci USA, 2005, 102(34): 12123-12128.
[7] Rahim G, Bischof S, Kessler F, et al. In vivo interaction between atToc33 and atToc159 GTP-binding domains demonstrated in a plant split-ubiquitin system. J Exp Bot, 2009, 60(1): 257-267.
[8] Petschnigg J, Wong V, Snider J, et al. Investigation of membrane protein interactions using the split-ubiquitin membrane yeast two-hybrid system. Methods Mol Biol, 2012, 812: 225-244.
[9] Pelletier J N, Campbell-Valois F X, Michnick S W. Oligomerization domain-directed reassembly of active dihydrofolate reductase from rationally designed fragments. Proc Natl Acad Sci USA, 1998, 95(21): 12141-12146.
[10] Shibasaki S, Sakata K, Ishii J, et al. Development of a yeast protein fragment complementation assay (PCA) system using dihydrofolate reductase (DHFR) with specific additives. Appl Microbiol Biotechnol, 2008, 80(4): 735-743.
[11] Remy I, Michnick S W. Clonal selection and in vivo quantitation of protein interactions with protein-fragment complementation assays. Proc Natl Acad Sci USA, 1999, 96(10): 5394-5399.
[12] Subramaniam R, Desveaux D, Spickler C, et al. Direct visualization of protein interactions in plant cells. Nat Biotechnol, 2001, 19(8): 769-772.
[13] Tarassov K, Messier V, Landry C R, et al. An in vivo map of the yeast protein interactome. Science, 2008, 320(5882): 1465-1470.
[14] Lim Y H, Charette J M, Baserga S J. Assembling a protein-protein interaction map of the SSU processome from existing datasets. PLoS One, 2011, 6(3): e17701.
[15] Schlecht U, Miranda M, Suresh S, et al. Multiplex assay for condition-dependent changes in protein-protein interactions. Proc Natl Acad Sci USA, 2012, 109(23): 9213-9218.
[16] Galarneau A, Primeau M, Trudeau L E, et al. Beta-lactamase protein fragment complementation assays as in vivo and in vitro sensors of protein protein interactions. Nat Biotechnol, 2002, 20(6): 619-622.
[17] Lee H K, Brown S J, Rosen H, et al. Application of beta-lactamase enzyme complementation to the high-throughput screening of toll-like receptor signaling inhibitors. Mol Pharmacol, 2007, 72(4): 868-875.
[18] Ou W, Marino M P, Lu C, et al. Rapid titration of retroviral vectors using a beta-lactamase protein fragment complementation assay. Gene Ther, 2013, 20(1): 43-50.
[19] Ozawa T, Kaihara A, Sato M, et al. Split luciferase as an optical probe for detecting protein-protein interactions in mammalian cells based on protein splicing. Anal Chem, 2001, 73(11): 2516-2521.
[20] Paulmurugan R, Gambhir S S. Monitoring protein-protein interactions using split synthetic renilla luciferase protein-fragment-assisted complementation. Anal Chem, 2003, 75(7): 1584-1589.
[21] Remy I, Michnick S W. A highly sensitive protein-protein interaction assay based on Gaussia luciferase. Nat Methods, 2006, 3(12): 977-979.
[22] Kim S B, Otani Y, Umezawa Y, et al. Bioluminescent indicator for determining protein-protein interactions using intramolecular complementation of split click beetle luciferase. Anal Chem, 2007, 79(13): 4820-4826.
[23] Luker K E, Mihalko L A, Schmidt B T, et al. In vivo imaging of ligand receptor binding with Gaussia luciferase complementation. Nat Med, 2012, 18(1): 172-177.
[24] Hida N, Awais M, Takeuchi M, et al. High-sensitivity real-time imaging of dual protein-protein interactions in living subjects using multicolor luciferases. PLoS One, 2009, 4(6): e5868.
[25] Stefan E, Aquin S, Berger N, et al. Quantification of dynamic protein complexes using Renilla luciferase fragment complementation applied to protein kinase A activities in vivo. Proc Natl Acad Sci USA, 2007, 104(43): 16916-16921.
[26] Malleshaiah M K, Shahrezaei V, Swain P S, et al. The scaffold protein Ste5 directly controls a switch-like mating decision in yeast. Nature, 2010, 465(7294): 101-105.
[27] Paulmurugan R, Umezawa Y, Gambhir S S. Noninvasive imaging of protein-protein interactions in living subjects by using reporter protein complementation and reconstitution strategies. Proc Natl Acad Sci USA, 2002, 99(24): 15608-15613.
[28] Ghosh I, Hamilton A D, Regan L. Antiparallel leucine zipper-directed protein reassembly: application to the green fluorescent protein. J Am Chem Soc, 2000, 122: 5658-5659.
[29] Jach G, Pesch M, Richter K, et al. An improved mRFP1 adds red to bimolecular fluorescence complementation. Nat Methods, 2006, 3(8): 597-600.
[30] Park K, Yi S Y, Lee C S, et al. A split enhanced green fluorescent protein-based reporter in yeast two-hybrid system. Protein J, 2007, 26(2): 107-116.
[31] Lin J, Wang N, Li Y, et al. LEC-BiFC: a new method for rapid assay of protein interaction. Biotech Histochem, 2011, 86(4): 272-279.
[32] Kojima T, Karasawa S, Miyawaki A, et al. Novel screening system for protein-protein interactions by bimolecular fluorescence complementation in Saccharomyces cerevisiae. J Biosci Bioeng, 2011, 111(4): 397-401.
[33] Chun W, Waldo G S, Johnson G V. Split GFP complementation assay for quantitative measurement of tau aggregation in situ. Methods Mol Biol, 2011, 670: 109-123.
[34] Pu J, Ha C W, Zhang S, et al. Interactomic study on interaction between lipid droplets and mitochondria. Protein Cell, 2011, 2(6): 487-496.
[35] Michnick S W, Ear P H, Landry C, et al. Protein-fragment complementation assays for large-scale analysis, functional dissection and dynamic studies of protein-protein interactions in living cells. Methods Mol Biol, 2011, 756: 395-425.
[36] Karimova G, Pidoux J, Ullmann A, et al. A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc Natl Acad Sci USA, 1998, 95(10): 5752-5756.
[37] Battesti A, Bouveret E. The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli. Methods, 2012, 58(4): 325-334.
[38] Borloo J, De Smet L, Vergauwen B, et al. A beta-galactosidase-based bacterial two-hybrid system to assess protein-protein interactions in the correct cellular environment. J Proteome Res, 2007, 6(7): 2587-2595.
[39] Karimova G, Dautin N, Ladant D. Interaction network among Escherichia coli membrane proteins involved in cell division as revealed by bacterial two-hybrid analysis. J Bacteriol, 2005, 187(7): 2233-2243.
[40] Verkaar F, van der Stelt M, Blankesteijn W M, et al. Discovery of novel small molecule activators of beta-catenin signaling. PLoS One, 2011, 6(4): e19185.
[41] Ear P H, Michnick S W. A general life-death selection strategy for dissecting protein functions. Nat Methods, 2009, 6(11): 813-816.
[42] Mie M, Naoki T, Uchida K, et al. Development of a split SNAP-tag protein complementation assay for visualization of protein-protein interactions in living cells. Analyst, 2012, 137(20): 4760-4765.
[43] Horecka J, Charter N W, Bosano B L, et al. Antibody-free method for protein detection on blots using enzyme fragment complementation. Biotechniques, 2006, 40(3): 381-383.
[44] Charter N W, Horecka J, Loh C Y, et al. Rapid, antibody-free detection of recombinant proteins on blots using enzyme fragment complementation. Methods Mol Biol, 2009, 536: 395-405.
[45] Kaddoum L, Magdeleine E, Waldo G S, et al. One-step split GFP staining for sensitive protein detection and localization in mammalian cells. Biotechniques, 2010, 49(4): 727-728, 730, 732 passim.
[46] Remy I, Michnick S W. A cDNA library functional screening strategy based on fluorescent protein complementation assays to identify novel components of signaling pathways. Methods, 2004, 32(4): 381-388.
[47] Lee S, Lee I, Jung Y, et al. In-frame cDNA library combined with protein complementation assay identifies ARL11-binding partners. PLoS One, 2012, 7(12): e52290.
[48] Chen Y, Hojo S, Matsumoto N, et al. Regulation of Mac-2BP secretion is mediated by its N-glycan binding to ERGIC-53. Glycobiology, 2013, 23(7): 904-916.
[49] Mossner E, Koch H, Pluckthun A. Fast selection of antibodies without antigen purification: adaptation of the protein fragment complementation assay to select antigen-antibody pairs. J Mol Biol, 2001, 308(2): 115-122.
[50] Koch H, Grafe N, Schiess R, et al. Direct selection of antibodies from complex libraries with the protein fragment complementation assay. J Mol Biol, 2006, 357(2): 427-441.
[51] Secco P, D’Agostini E, Marzari R, et al. Antibody library selection by the beta-lactamase protein fragment complementation assay. Protein Eng Des Sel, 2009, 22(3): 149-158.
[52] MacDonald M L, Westwick J K. Exploiting network biology to improve drug discovery. Methods Mol Biol, 2007, 356: 221-232.
[53] Xie W, Pao C, Graham T, et al. Development of a cell-based high throughput luciferase enzyme fragment complementation assay to identify nuclear-factor-e2-related transcription factor 2 activators. Assay Drug Dev Technol, 2012, 10(6): 514-524.
[54] Zhao X, Jones A, Olson K R, et al. A homogeneous enzyme fragment complementation-based beta-arrestin translocation assay for high-throughput screening of G-protein-coupled receptors. J Biomol Screen, 2008, 13(8): 737-747.
[55] Sung M K, Lim G, Yi D G, et al. Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast. Genome Res, 2013, 23(4): 736-746.
[56] Rackham O, Brown C M. Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs. EMBO J, 2004, 23(16): 3346-3355.
[57] Valencia-Burton M, McCullough R M, Cantor C R, et al. RNA visualization in live bacterial cells using fluorescent protein complementation. Nat Methods, 2007, 4(5): 421-427.
[58] Shyu Y J, Hu C D. Fluorescence complementation: an emerging tool for biological research. Trends Biotechnol, 2008, 26(11): 622-630. |
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