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中国生物工程杂志

CHINA BIOTECHNOLOGY
中国生物工程杂志  2020, Vol. 40 Issue (12): 31-40    DOI: 10.13523/j.cb.2009008
新型冠状病毒检测与治疗     
基于MS2噬菌体病毒样颗粒的RT-PCR检测新型冠状病毒(SARS-CoV-2)质控品制备*
王国强1,2,于茵茵3,曾华辉1,王旭东3,吴玉彬3,尚立芝1,李玉林2,张怡青2,4,张西西5,张振强1,**(),王云龙2,4,**()
1河南中医药大学 郑州 450046
2河南省生物工程技术研究中心 郑州 450002
3河南省职工医院 郑州 450002
4郑州职业技术学院 郑州 450000
5河南师范大学 新乡 453007
Preparation of Quality Control Materials for RT-PCR Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Based on MS2 Phage Virus-like Particles
WANG Guo-qiang1,2,YU Yin-yin3,ZENG Hua-hui1,WANG Xu-dong3,WU Yu-bin3,SHANG Li-zhi1,LI Yu-lin2,ZHANG Yi-qing2,4,ZHANG Xi-xi5,ZHANG Zhen-qiang1,**(),WANG Yun-long2,4,**()
1 Henan University of Chinese Medicine, Zhengzhou 450046, China
2 Henan Bioengineering Technology Research Center, Zhengzhou 450002, China
3 Henan General Hospital, Zhengzhou 450002, China
4 Zhengzhou Technical College, Zhengzhou 450000, China
5 Henan Normal University, Xinxiang 453007,China
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摘要:

目的: 制备热稳定性好、耐RNase攻击及可全程监控操作的核酸检测新型冠状病毒阳性质控品。方法: 分别扩增MS2噬菌体外壳蛋白CP(含PAC位点)基因以及成熟酶蛋白A基因序列(含核糖体结合位点),先后插入质粒pET28a多克隆位点不同位置,构建通用重组载体pET28a/CP-A。合成包含ORF1ab基因、N基因和E基因三个靶标的特定核酸序列,插入到重组载体pET28a/CP-A中PAC位点的下游,构建包含靶序列的重组载体pET28a/CP-A/S。通过原核表达系统表达目的蛋白,采用硫酸铵和凝胶过滤层析进行纯化,利用透射电镜和动态光散射对蛋白质进行物理表征。全能核酸酶消化形成的盔甲RNA,通过RT-PCR检测其残余核酸和热稳定性。结果: 成功构建包含MS2噬菌体外壳蛋白CP基因、成熟酶蛋白A基因和外源靶核酸的重组载体,目的蛋白在25℃、IPTG 0.3mmol /L、诱导14h时以可溶性形式得到高效表达,纯化后,得到了大小均一、直径为23~28nm的病毒样颗粒,经核酸酶消化后RT-PCR检测,颗粒溶液中几乎无核酸残余且形成了包封靶基因的盔甲RNA。加速破坏试验表明该盔甲RNA无菌过滤后可在37℃稳定保持10天。结论: 在体外,利用MS2噬菌体外壳蛋白和成熟酶蛋白自组装包封外源靶序列制备的盔甲RNA,其热稳定性好,可全程监控整个检测过程,可作为核酸检测SARS-CoV-2的定性或定量质控品。

关键词: 新型冠状病毒(2019)MS2噬菌体盔甲RNA病毒样颗粒    
Abstract:

Objective: Preparation of positive quality control products with good thermal stability, resistance to RNase attack and full monitoring for RT-PCR detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Methods: The MS2 phage coat protein CP (including the PAC site) gene sequence and the mature enzyme protein A gene sequence (including the ribosome binding site) were amplified and inserted into the plasmid pET28a to construct the universal recombinant vector pET28a/CP-A. Synthesize a specific nucleic acid sequence containing ORF1ab gene, N gene and E gene of SARS-Cov-2, and insert it into the downstream of the PAC site, which is named pET28a/CP-A.The recombinant protein is expressed through the prokaryotic expression system, and purified by ammonium sulfate and gel filtration chromatography. The purified protein is physically characterized by electron microscopy and dynamic light scattering. The formed armor RNA is digested with omnipotent nuclease, and its thermal stability is verified by fluorescent RT-PCR. Results: A recombinant vector containing the MS2 bacteriophage coat protein gene, the mature enzyme protein gene and exogenous nucleic acid was successfully constructed. VLPs was efficiently expressed in the form of soluble protein at 25℃ and IPTG at 0.3mmol /L for 14h. After purification, The VLPs were observed under transmission electron microscopy in uniform shape and size,with a diameter of about 23-28nm. The VLPs were digested with Benzonase nuclease, and detected by RT-PCR, which confirmed that they formed armor RNA that encapsulated the target gene. The armor RNA can exist stably at 37℃ for 10-15 days under sterile conditions. Conclusion: In vitro, the armor RNA encapsulating foreign target sequence prepared by self-assembly of MS2 phage coat protein and mature enzyme protein has good thermal stability and can monitor the entire detection process. It can be used as a qualitative or quantitative quality control product for the detection of SARS-CoV-2 by RT-PCR.

Key words: Severe acute respiratory syndrome coronavirus 2    MS2 phage    Armor RNA    Virus-like particles
收稿日期: 2020-09-05 出版日期: 2021-01-14
ZTFLH:  Q816  
基金资助: * 河南省新型冠状病毒应急科技攻关资助项目(201100310300)
通讯作者: 张振强,王云龙     E-mail: zhang_zhenqiang@126.com;biowyl@126.com
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张西西
张振强
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引用本文:

王国强,于茵茵,曾华辉,王旭东,吴玉彬,尚立芝,李玉林,张怡青,张西西,张振强,王云龙. 基于MS2噬菌体病毒样颗粒的RT-PCR检测新型冠状病毒(SARS-CoV-2)质控品制备*[J]. 中国生物工程杂志, 2020, 40(12): 31-40.

WANG Guo-qiang,YU Yin-yin,ZENG Hua-hui,WANG Xu-dong,WU Yu-bin,SHANG Li-zhi,LI Yu-lin,ZHANG Yi-qing,ZHANG Xi-xi,ZHANG Zhen-qiang,WANG Yun-long. Preparation of Quality Control Materials for RT-PCR Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Based on MS2 Phage Virus-like Particles. China Biotechnology, 2020, 40(12): 31-40.

链接本文:

https://manu60.magtech.com.cn/biotech/CN/10.13523/j.cb.2009008        https://manu60.magtech.com.cn/biotech/CN/Y2020/V40/I12/31

引物名称 引物序列(5'-3')
A-F CCCAAGCTTTGTAGGTAGCCGGAATTCCA
A-R AAGGAAAAAAGCGGCCGCCTATCTAGAGAGCCGTTG
CP-F CTAGCTAGCCTTCTAACTTTACTC
CP-R CGCGGATCCTGTTGTCTTCGACATGGGTA
IN-F CGCGGATCCGGGGAACTTCTCCTGCTAGAAT
IN-R CCCAAGCTTATATTGCAGCAGTACGCACACA
N-F GGGGAACTTCTCCTGCTAGAAT
N-R CAGACATTTTGCTCTCAAGCTG
N-Probe 5'-CY5-TTGCTGCTGCTTGACAGATT-TAMRA-3'
ORF1ab-F CCCTGTGGGTTTTACACTTAA
ORF1ab-R ACGATTGTGCATCAGCTGA
ORF1ab-Probe 5'-ROX-CCGTCTGCGGTATGTGGAAAGGTTATGG-BHQ1-3'
E-F ACAGGTACGTTAATAGTTAATAGCGT
E-R ATATTGCAGCAGTACGCACACA
E-Probe 5'-FAM-ACACTAGCCATCCTTACTGCGCTTCG-BHQ2-3'
表1  载体构建和RT-PCR中用到的引物及探针序列
图1  重组质粒构建和鉴定
图2  共表达质粒的表达区域结构示意图及插入序列
图3  目的蛋白的纯化和鉴定
图4  病毒样颗粒的物理表征
图5  病毒样颗粒残余核酸PCR检测
图6  标准曲线建立及病毒样颗粒核酸拷贝数确定
图7  病毒样颗粒(盔甲RNA)的热稳定性检测
[1] Wang C, Horby P W, Hayden F G, et al. A novel coronavirus outbreak of global health concern. Lancet, 2020,395(10223):470-473.
pmid: 31986257
[2] 国家卫生健康委员会. 新型冠状病毒感染的肺炎纳入法定传染病管理. [2020-01-21]. http://www.nhc.gov.cn/jkj/s7915/202001/e4e2d5e6f01147e0a8df3f6701d49f33.shtml.
National Health Commission. New coronavirus-infected pneumonia is included in the management of legal infectious diseases. [2020-01-21]. http://www.nhc.gov.cn/jkj/s7915/202001/e4e2d5e6f01147e0a8df3f6701d49f33.shtml.
[3] Lu R, Zhao X, Li J, et al. Genomic characterisation and epidemiology of 2019 novel coronavirus: Implications for virus origins and receptor binding. Lancet, 2020,395(10224):565-574.
doi: 10.1016/S0140-6736(20)30251-8 pmid: 32007145
[4] Tang X L, Wu C C, Li X, et al. On the origin and continuing evolution of SARS-CoV-2. National Science Review, 2020,7(6):1012-1023.
[5] Cui J, Li F, Shi Z L. Origin and evolution of pathogenic coronaviruses. Nature Reviews Microbiology, 2019,17(3):181-192.
doi: 10.1038/s41579-018-0118-9 pmid: 30531947
[6] Shun A, Takaaki K, Naoya D, et al. Commentary: Origin and evolution of pathogenic coronaviruses. Frontiers in immunology, 2020,11:811.
doi: 10.3389/fimmu.2020.00811 pmid: 32373134
[7] Liu P, Jiang J Z, Wan X F, et al. Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2). PLoS Pathog, 2020 , 16(5):e1008421.
doi: 10.1371/journal.ppat.1008421 pmid: 32407364
[8] 国家卫生健康委员会. 新型冠状病毒肺炎诊疗方案(试行第一到八版). [2020-08-20]. http://www.nhc.gov.cn/yzygj/ggwsylglc/ new_list.shtml.
National Health Commission. COVID-19 protocol (trial 1st to 8th edition). [2020-08-20]. http://www.nhc.gov.cn/yzygj/ggwsylglc/ new_list.shtml.
[9] 许丽, 梁文, 杨雪, 等. 新型冠状病毒RNA标准物质. 科学通报, 2020,65(22):2363-2370.
Xu L, Liang W, Yang X, et al. SARS-CoV-2 RNA reference materials. Chinese Science Bulletin, 2020,65(22):2363-2370.
[10] Wei Y, Yang C, Wei B, et al. RNase-resistant virus-like particles containing long chimeric RNA sequences produced by two-plasmid coexpression system. Journal of Clinical Microbiology, 2008,46(5):1734-1740.
doi: 10.1128/JCM.02248-07 pmid: 18305135
[11] Dika C, Duval J F L, Ly-Chatain H M, et al. Impact of internal RNA on aggregation and electrokinetics of viruses: Comparison between MS2 phage and corresponding virus-like particles. Applied and Environmental Microbiology, 2011,77(14):4939-4948.
doi: 10.1128/AEM.00407-11 pmid: 21622784
[12] Pickett G G, Peabody D S. Encapsidation of het erologous RNAs by bact eriophage MS 2 coat protein. Nucleic Acids Res, 1993,21(19):4621-4626.
doi: 10.1093/nar/21.19.4621 pmid: 8233800
[13] Zhou E M, Ridd D, Riva J, et al. Development and evaluation of an IgM-capture ELISA for detection of recent infection with blue tongue viruses in cattle. Journal of Virological Methods, 2001,91(2):175-182.
pmid: 11164499
[14] 徐淑芹, 黄兴富. 耐核糖核酸酶病毒样颗粒的构建和表达. 医学检验与临床, 2008,19(5):33-35.
Xu S Q, H X F. The construction and expression of resistant RNA virus like particles. Medical Laboratory Science and Clinics, 2008,19(5):33-35.
[15] 周婷婷, 朱进. 新型冠状病毒实验室检测方法及应用. 南京医科大学学报, 2020,40(4):474-477.
Zhou T T, Zhu J, Application and laboratory detection of severe acute respiratory syndrome coronavirus-2. Journal of Nanjing Medical University, 2020,40(4):474-477.
[16] 温和心, 龙英全, 蒋荣华, 等. RNA病毒质控物研究进展. 动物医学进展, 2013,34(1):97-101.
Wen H X, Long Y Q, Jiang R H, et al. Research progress of RNA virus quality control substances. Progress in Veterinary Medicine, 2013,34(1):97-101.
[17] Stockley P G, S tonehouse N J, Murray J B, et al. Probing sequence-specific RNA recognition by the bacteriophage MS2 coat protein. Nucleic Acids Res, 1995,23(1):2512-2518.
[18] 李金明. RNA病毒扩增检测的质控品和标准品研究进展. 中华医学检验杂志, 2004,27(12):873-874.
Li J M. Research progress of quality control and standard products for RNA virus amplification and detection. Chinese Journal of Laboratory Medicine, 2004,27(12):873-874.
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