25 October 2017, Volume 37 Issue 10
    

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  • YANG Xu, HUANG Wei-wei, YAO Yu-feng, LIU Cun-bao, SUN Wen-jia, BAI Hong-mei, MA Yan-bing
    China Biotechnology. 2017, 37(10): 1-7. https://doi.org/10.13523/j.cb.20171001
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    Optimization approaches have been shown in many published paper to be successful in improving the expression of a heterogenous gene in yeast cells, however, it is always needed to find out whether and how an approach works for the actual case. Multiple strategies were tried for the efficient expression of HPV16 L1 in Pichia pastoris, including the use of four gene versions with distinct sequence features (M16 and Y16 optimized for Pichia pastoris cells, P16 for mammalian cells, and W16 from a wild type sequence, respectively), and the employment of plasmid vectors facilitating selection of colonies with high or low gene copy numbers and host strains with different proteinase deficiency. M16 showed the highest expression, followed by Y16 and P16, whereas W16 was merely detectable. However, the codon adaptation order from high to low is sequentially Y16, M16, W16, and P16. The results indicate that the actually effective mechanism of codon optimization might not definitely attribute to codon adaptation. In addition, improving protein stability using specific proteinase-deficient host strains was also proved to be effective for L1 expression. In conclusion, the findings added useful information to our knowledge of optimizing expression of heterogeneous genes in Pichia pastoris cells.
  • XU Li, JI Cai-xia, LIU Xiao-hua, YU Ting-ting, LUO Jin-yong
    China Biotechnology. 2017, 37(10): 8-15. https://doi.org/10.13523/j.cb.20171002
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    Objective:To confirm the effects of DLX1 on BMP9-induced osteogenic differentiation of C3H10T1/2 mesenchymal stem cells.Methods:C3H10T1/2 cells were infected with recombinant adenoviruses expressing BMP9.Expression level of DLX1 upon BMP9 stimulation was measured by RT-PCR and Western blot. Then, the effects of DLX1 on BMP9-induced osteogenic differentiation of C3H10T1/2 cells were determined by ALP staining, Alizarin red S staining, immunocytochemical and entopic bone formation assay. Luciferase reporter assay and Western blot were conducted to analyze the activation level of Smad1/5/8 signal. Results:BMP9 increased the DLX1 expression of C3H10T1/2 cells. BMP9-induced ALP activity, calcium deposition and OCN expression of C3H10T1/2 cells in vitro was enhanced by overexpression of DLX1, but was inhibited by RNAi of DLX1. Overexpression of DLX1 led to an increase in new bone formation compared with the BMP9 group, however, RNAi of DLX1 resulted in a decrease in new bone formation in vivo. Moreover, BMP9-induced activation of Samd1/5/8 were accordingly increased along with overexpression of DLX1, and yet decreased along with DLX1 RNAi. Conclusions:Collectively, these above results implied us that DLX1 may play a private role in regulating BMP9-induced osteogenic differentiation of MSCs at last partly through Smad1/5/8 signal activation.
  • HE Shi-bao, YANG Cheng-fei, SHANG Sha, WANG Ling-yan, TANG Wen-chao, ZHU Yong
    China Biotechnology. 2017, 37(10): 16-25. https://doi.org/10.13523/j.cb.20171003
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    Objective:The objective is to clone the cDNA sequence of Bmtol from silkworm Bombyx mori, predict the protein structure, explore its expression profiles in different tissues and at different time of JHA treatment of silkworm, and to provide a fundamental evidence for the future study of the physiological function of this gene.Method:The full-length cDNA sequence of Bmtol was cloned from the entire tissues of silkworm by RT-PCR and submitted to the GenBank database. Physiochemical properties and structure characteristics of the deduced amino acid sequence were analyzed by multiple bioinformatics methods. Phylogenetic tree between BmTOL and its homologous JHBP from other insects was constructed using neighbor-joining of MEGA5.0. The expression levels of Bmtol mRNA of different tissues at day-3 in 5th instar were detected by qPCR.Result:The full-length cDNA sequence of Bmtol was obtained (GenBank is KY681053). The open reading frame (ORF) of Bmtol is 759 bp, encoding a protein of 252 aa with an estimated molecular weight of 27.72 kDa and pI of 6.16. The encoding protein has a signal peptide and no transmembrance structure, possesses a JHBP superfamily domain between 25~251 residues, exists hydrophobic regions in N-terminus and contains two conserved cysteins, suggesting that it is the core part of the family proteins to bind ligand. Subcellular localization results showed that BmTOL was located on the secretory pathway about endoplasmic reticulum, golgi and plasmalemma which belongs to the secretory protein. BmTOL possesses three α-helixs. The thirty-fourth bit Cys and the forty-fourth bit Cys form a disulfide bond in the α1 helix and the N-terminus, which forms the core part of the BmTOL protein binding to the ligand. The results of amino acid sequence alignment showed that the amino acid sequence of BmTOL of silkworm was significantly different from TO of other insect. It was homologous to DmTO with 25.10% amino acid sequence identity, and had 19.69% sequence identity with MsTO, and had 25.78% sequence identity with AgTOL-2, and had 23.53% sequence identity with AaTO, and had 28.17% sequence identity with PrTOL, and had 23.05% sequence identity with AmTOL, and had 21.18% sequence identity with EpTO1. Phylogenetic analysis revealed that BmTOL,EpTO1, MsTO, AmTOL, DmTO and PrTOL were clustered into one group, AaTO, AgTOL-2 and BmTOL were clustered into the other group. Besides, the results of qPCR showed that the Bmtol transcripts were higher expressed in the head, epidermis and testis of the day-3 in 5th instar.The Bmtol gene expression was not significantly different in the head at 0 h, 24 h, 48 h, 72 h and 96 h in 5th silkworm by JHBP treatment.Conclusion:BmTOL belongs to the JHBP family with a JHBP domain. The results of expression profiling and JHA treatment suggested that BmTOL belongs to juvenile hormone binding protein (JHBP) and is involved in not only juvenile hormone binding recognition, but also other physiological functions.
  • YANG Tian-ran, WU Shi-jie, XIN Ming-xiu
    China Biotechnology. 2017, 37(10): 26-32. https://doi.org/10.13523/j.cb.20171004
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    The activity of trypsin was increased 32.92% on average when the amount of substance rate between trypsin and daptomycin is 34.05, which indicated that daptomycin is a new trypsin activator. Daptomycin-trypsin and daptomycin-trypsin-substrate complex were studied by the molecular docking, and isothermal titration calorimetry (ITC) was used to support the result of molecular docking. It showed that daptomycin was close to the activity center of trypsin, and the R group of daptomycin was interacted with histidine-57 of trypsin, and this histidine-57 located in the activity center of the enzyme. The complex structure between enzyme and substrate is more stable when the daptomycin is presence, which is beneficial to the catalytic effect. The ITC results demonstrated that a daptomycin binding site was located in trypsin, and the dissociation constant Kd is 17.83 μM, molar combustion enthalpy △H is 237.9±28.17 cal/mol, molar binding entropy △S is 22.5 cal/mol/deg, and all the results support the molecular docking results. It indicated that daptomycin is a new trypsin activator and it will have application in proteomics and other fields.
  • ZHOU Zhong-ting, ZHANG Quan, WANG Sheng-tao, CAI Yin, NAKANISHI Hideki, YIN Jian
    China Biotechnology. 2017, 37(10): 33-41. https://doi.org/10.13523/j.cb.20171005
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    Objectives:Polymeric nanomicelles have attracted more attention since it could become a targeted delivery system of photosensitizers for cancer photodynamic therapy (PDT). Methods:The poly(butyl acrylate)-block-poly(glycidyl methacrylate) (PtBA-b-PGMA) copolymer was first synthesized by atom transfer radical polymerization. After the tert-butyl group was removed from PtBA-b-PGMA, mannose was covalently linked via amide reaction. Finally, BODIPY-based photosensitizers were introduced by the "click" reaction to obtain polymeric nanomicelles (Man-PAA-b-PGMA-BPDIPY). Structure of Man-PAA-b-PGMA-BPDIPY was confirmed by 1H NMR and FT-IR. The size and morphology of Man-PAA-b-PGMA-BODIPY was characterized by transmission electron microscopy and dynamic light scattering. The cytotoxicity, cellular uptake and PDT effects of Man-PAA-b-PGMA-BODIPY were investigated by MTT assay and confocal laster scanning microscope. Results:The relative molecular weight of PtBA-b-PGMA is 16 924, and the dispersion coefficient is 1.36. The appearance of a peak at 2 106 cm-1 in the FTIR spectrum of Man-PAA-b-PGMA-N3 indicates successful grafting of azide groups onto the polymer. This peak disappeared and a new peak at 1 637 cm-1 was observed after azide-alkyne cycloaddition "click" chemistry, indicating the formation of triazole bonds in Man-PAA-b-PGMA-BODIPY. Polymeric nanomicelles have uniform size distribution and excellent stability in aqueous solution. The average hydrodynamic diameter of polymeric nanomicelles is 178 nm with a narrow size distribution (PDI=0.298). Man-PAA-b-PGMA-BODIPY did not exhibit toxicity against MDA-MB-231 and HEK293 cells in the dark, while the enhanced phototoxicity was observed on MDA-MB-231 cancer cells under 535 nm LED irradiation. Conclusions:Man-PAA-b-PGMA-BODIPY was efficiently internalized by MDA-MB-231 cancer cells through receptor-mediated endocytosis, while HEK293 normal cells showed much lower endocytosis towards micelles under the same conditions. Thus, Man-PAA-b-PGMA-BODIPY shows its potential for targeted PDT of cancer.
  • WANG Shi-wei, WANG Min, WANG Qing-hui
    China Biotechnology. 2017, 37(10): 42-52. https://doi.org/10.13523/j.cb.20171006
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    Rhodococcus ruber CGMCC3090 was separated from soil polluted by nitriles at Tianjin suburb.The strain can transform nitriles into correspondent amides with broad substrate spectra and higher catalytic activity, stronger substrate tolerance, good regioselectivity especially to dinitrile substrates (e.g. adiponitrile).The new type of NHase was purified to homogenety after sonication, ammonium sulfate fractionation, hydrophobic, ion exchange and gel-filtration column chromatography. About 17.14-fold purification was achieved with 26.2% yield. The holoenzyme purified (Mr 105kDa;α2β2) consists of α subunit (Mr 24.3 kDa) and β subunit (Mr 28 kDa) respectively. The optimal temperature and pH was 30℃ and pH 7.5 respectively.The enzyme purified was inhibited or promoted by different metals in various degrees. The Km and Vmax values of purified NHase respectively were 178.8 mM and 209.1 μmole/min/mg protein using 3-cyanopyridine as substrate.The nitrile hydratase crystallization conditions were screened and optimized by using 6 crystallization reagents screened from 194 reagents from 4 set Kit(Hampton Research).A single crystal from the NHase was obtained at the optimum conditions(15 mg protein/ml,16℃,pH 7.5,30 d)by using 112-34# reagent (0.05mol/L cadmium sulfate hydrate,0.1mol/L HEPS and 1.0mol/L sodium acetate trihydrate). the Nitrile hydratase single crystal had a 3.7Å resolution by X ray diffraction analysis.It paved the way for in-depth study of the structure and function of the nitrile hydratase from Rhodococcus ruber CGMCC3090 strain.
  • LIU Jun-wei, CHANG Rui-heng, HUI Peng, DONG Shi-shang, WANG Jin-feng, SUN Bo, YANG Cheng
    China Biotechnology. 2017, 37(10): 53-59. https://doi.org/10.13523/j.cb.20171007
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    Objective:To prepare the anti-Ebola nucleoprotein monoclonal and polyclonal antibodies, and establish a method for determining the EBOV nucleoprotein. Methods:The rabbits and mice were immunized with EBOV nucleoprotein for preparing polyclonal and monoclonal antibodies, respectively. After optimized the conditions, such as the concentration of antibodies, coating solution and so on, the sandwich ELISA was established. Results:The polyclonal antibodies and two hybridoma cell lines that could produce monoclonal antibodies were prepared. The results of Western blot showed that the binding region of both polyclonal and monoclonal antibodies were in N terminal 1~35 amino acid of the nucleoprotein. The sandwich ELISA for detecting EBOV nucleoprotein has been optimized. The linear range of detection was 31.2~1 000 ng/ml. And the limit of detection was 2.6 ng/ml. Conclusions:The high specific polyclonal and monoclonal antibodies of anti-EBOV nucleoprotein were prepared. The quantitative method to detecting EBOV nucleoprotein was established.
  • SU Xiao-rui, LI Wei-guo, WANG Yan-hui, GAO Xiao-jing, SHAN Yi-hong, TAN Fei-fei, LI Xiang-dong, TIAN Ke-gong
    China Biotechnology. 2017, 37(10): 60-64. https://doi.org/10.13523/j.cb.20171008
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    The focuses are on the scale-up of a Sf9 cell line to produce recombinant porcine parvovirus (PPV) VP2 protein expression using baculovirus/insect expression system from the initial 3-L bench scale to the 40-L scale. In 3L bioreactor, HA titer of VP2 protein side-by-side comparison of shake flask by optimization of DO and Agit. The operational parameters of temperature, DO, and pH for large vessels were set at the same values as those of 3-L bioreactor. Appropriately applying the calculated results to power input per volume, oxygen transfer coefficient and tip speed, resulted in successful scale-up of agitation speed for the large bioreactors. By HA titer analysis, VP2 protein had identical haemagglutinating activity comparison of 3-L. By guinea pig immunization test, It is found that recombinant VP2 subunit vaccine can be induced high level antibody reaction, and immune with recombinant VP2 subunit vaccine was faster than classical inactivated PPV vaccine.
  • GE Lin, LIU Xin-yu, WANG Guirong
    China Biotechnology. 2017, 37(10): 65-71. https://doi.org/10.13523/j.cb.20171009
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    Objective:to construct the transgenic mice expressing human SP-B gene with different alleles in +1580 SNP and the bacterial pneumonia model. Methods:The hSP-B gene was integrated into the mouse chromosome to obtain the F0 generation mice by microinjection technology. The mice were mated with mSP-B gene knockout mice to eliminate the mSP-B gene gradually. Using PCR technique to identify the genotype of mice, and to determine the allele of +1580 locus by sequencing. The Pseudomonas aeruginosa was inoculated into the lung of mice to make the model of bacterial pneumonia, and the control group was injected with the same amount of sterile saline. Results:F2 mice expressed human SP-B protein only, and the expression level of SP-B protein was similar to that in human lung. The +1580 locus alleles T was found in 3 mice families and allele C was found in 1 mice family. After infection for 24 hours, the inflammatory exudation in the alveolar of mice was obvious. A large number of neutrophils were observed in mice alveolus. SP-B protein level was significantly reduced, but there was no significant difference between the different alleles. Conclusions:the construction of human SP-B protein expression transgenic mice model and bacterial pneumonia model were successful. The mice will be a powerful tool for the further studies on physiological function of human SP-B protein and the relationship between +1580 gene polymorphism and lung diseases.
  • REN Shuang, ZHU Hong-liang
    China Biotechnology. 2017, 37(10): 72-80. https://doi.org/10.13523/j.cb.20171010
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    Recently, CRISPR/Cas9 genome editing technology has been broadly utilized to crop breeding. Genome-edited but transgene-free plants can be segregated away from T0 transgenic plants by genetic separation, which will eliminate the risk of transgenic safety. Copy numbers of transgene which has been integrated into the transformed plant genome is a critical factor affecting the genetic separation of the offspring. Copy numbers are currently obtained by Southern blot analysis, but this method is complicated and requires relatively large amounts of plant materials. As to avoid these shortcomings, Real-time Fluorescent Quantitative Polymerase Chain Reaction provides a new solution. The endogenous ascorbate peroxidase (APX) is selected as reference gene. The exogenous hygromycin phosphortransferase (HPT) is selected as target gene. With the Taqman RT-PCR conditions, one copy was significantly estimated in the 12 genome edited tomatos of slyPDS (Phytoene desaturase). Initially, a sensitive and efficient detection system is developed for estimating copy number in genome edited tomato, which laid a foundation for the rapid and reliable screening of improved crops.
  • WANG Jing-sheng, WANG Qiu-feng, LI Yong, LIU Yan, ZHANG Xian-chu, LI Bo, DONG Qing-shan, LIU Yue
    China Biotechnology. 2017, 37(10): 81-85. https://doi.org/10.13523/j.cb.20171011
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    Many environmental factors have a great effect on the process and efficiency for converting fermentable sugar into ethanol by Saccharomyces cerevisiae. Studies on the kenetics of the ethanol formation are benefit for understanding the ethanol fermentation mechanisms. It can provide a theoretical basis for the amplification and optimization of the ethanol production process. Ethanol fermentation kinetics in many literatures are based on cell growth model, which include the models of ethanol production, these kind models have more variables. Simultaneous saccharification and ethanol fermentation with different reducing sugar initial concentrations was simulated by Logistic equation model. The display function model of ethanol concentration was given. The results showed that:in the ethanol process of simultaneous saccharification and fermentation with 310g/L corn flour material, the fermentation time could be shortened and the efficiency for converting fermentable sugar into ethanol could be raised by increasing the concentration of the initial reducing sugar.
  • LI Xiao-fei, CAO Ying-xiu, SONG Hao
    China Biotechnology. 2017, 37(10): 86-92. https://doi.org/10.13523/j.cb.20171012
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    The development of CRISPR/Cas9 system has revolutionized our ability to edit DNA and to modulate expression levels of target genes, thus providing powerful tools to accelerate the precise genome engineering of a wide range of organisms. The developed CRISPR/Cas9 system consists of the Cas9 protein and a programmed sgRNA. The Cas9 protein binds to the Cas9 handle of sgRNA and forms a Cas9-sgRNA complex. Then, the Cas9-sgRNA complex binds to specific DNA targets by Watson-Crick base pairing between the sgRNA and the DNA target, and the DNA will be cleaved due to the nuclease activity of the Cas9 protein. Compared with the traditional genome editing technologies, CRISPR/Cas9 system has several obvious advantages, inculding ease of use, simplicity, low cost, programmed and multiple genes editing. CRISPR/Cas9 genome editing technology and the derived CRISPRi and CRISPRa gene expression regulation techniques have been widely used in a variety of eukaryotic and prokaryotic organisms. Here, the origin and mechanism of CRISPR/Cas9 system, its application in organisms and its derived technology were reviewed, and its off-target effect and future prospects were outlined.
  • XU Yan, ZHAO Xue, DU Jing-jing, YANG Qiong, YANG Da-hong, PU Hong-zhou, ZHANG Shun-hua, ZHU Li
    China Biotechnology. 2017, 37(10): 93-102. https://doi.org/10.13523/j.cb.20171013
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    Circular RNA (circRNA) is a novel type of endogenous noncoding RNA. Unlike linear RNAs that are terminated with 5'caps and 3'tails, circRNAs form covalently closed loop structures with neither 5'~3'polarities nor polyadenylated tails, by reverse splicing. circRNAs were typically considered to be by-products of aberrant RNA splicing due to their low levels of expression. However, with the development of RNA deep sequencing technology and bioinformatics, more circRNAs have been identified. circRNA is endogenous, abundant, conserved and stable in mammalian cells, and often show specific expression or developmental model in tissue, and there are differences in subcellular localization. Many studies have shown that circRNAs play an important role in the regulation of animal growth and development, which is also closely associated with the occurrence and development of diseases. Here, the discovery, formation, characteristics, mechanism, research methods and current research progress of circRNA were reviewed, it may contribute to further studies.
  • TANG Zhi-xiong, GOU De-ming
    China Biotechnology. 2017, 37(10): 103-110. https://doi.org/10.13523/j.cb.20171014
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    Myogenesis involves myoblast proliferation and differentiation to myocytes, later,these myocytes fuse to form multinucleated myotubes. MicroRNAs (miRNAs) are small non-coding RNAs, which post-transcriptionally regulate gene expression by binding to the 3'UTR of target mRNA. miRNAs play important role in the regulation of myogenesis.The function of muscle-specific expression of miRNAs(myomiRs), such as miR-1, miR-133, miR-206, miR-208, miR-499 and miR-486, as well as several non-myomiRs, including miR-27, miR-29, miR-128, miR-199a and miR-431 were introduced. In addition, several lncRNAs those interact with miRNAs to regulate muscle differentiation have been summarized. The regulatory mechanism of miRNAs on myogenesis were elucidated and the latest research progress were reviewed.
  • LI Da-wei, HE Jin, HE Feng-li, LIU Ya-li, DENG Xu-dong, YE Ya-jing, YIN Da-chuan
    China Biotechnology. 2017, 37(10): 111-117. https://doi.org/10.13523/j.cb.20171015
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    Silk fibroin (SF) and chitosan (CS) have excellent biocompatibility and biodegradability, however the disadvantages of pure SF and CS scaffold limit their application in tissue engineering. SF/CS composites that can overcome the shortcoming of pure SF and CS scaffold have excellent mechanical properties, plasticity, tunable porosity and pore size, and component complementary advantages. SF/CS composites (micro/nano particles, membranes, nanofibers, hydrogels and 3D porous scaffolds) have been used in bone, cartilage, skin, nerve, fat, heart and cornea tissue engineering and injury repair. At present, the research on SF/CS composites at home and abroad is still in its infancy. The characteristics, the preparation methods and application of SF/CS composites in tissue engineering were briefly introduced.
  • LIN You-hong, CHENG Xia-ying, YAN Yi-wen, LIANG Zong-suo, YANG Zong-qi
    China Biotechnology. 2017, 37(10): 118-125. https://doi.org/10.13523/j.cb.20171016
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    In recent years, transgenic technology has developed rapidly, and it has found an increasingly wide utilization in medical and industrial fields. Drug therapy which based on recombinant proteins is the fastest growing technology in pharmaceutical production areas. Their high specificity and low side effect makes treatment efficiency very prominent. However, the complexity of recombinant proteins synthesis also bring production to a certain restrictions. In order to promote the application of these recombinant proteins, expression systems that fit it and strategies that can facilitate it were explored. Compared to other traditional production systems, the research found that Chlamydomonas chloroplast as a bioreactor has several incomparable advantages, it can achieve more rapidly, high yields, lower cost on the production of recombinant proteins, and can be grown in artificial medium and artificially controlled conditions, which reduce the risk of contamination. Through the application of some new techniques, synthesis of recombinant proteins has also been improved. Therefore,Chlamydomonas chloroplast will play a great role in the field of biotechnology in the future as a recombinant proteins with pharmaceutical relevance bioreactor. The expression of recombinant proteins and the optimization strategies in Chlamydomonas chloroplast were reviewed.
  • MAO Kai-yun, FAN Yue-lei, WANG Yue, LU Jiao, CHEN Da-ming
    China Biotechnology. 2017, 37(10): 126-135. https://doi.org/10.13523/j.cb.20171017
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    Objective:To analyze the development status and trend of Mesenchymal stem cells (MSCs) therapeutic products in the sense of product manufacturing.Methods:Based on the Cortellis database of Clarivate Analytics, analyzed the searching results utilizing quantitative analysis and comparative analysis methods.Results:Currently, 5 MSCs therapeutic products have been launched into markets, and another 9 MSCs therapeutic products are at registration phase or Phase Ⅲ clinical trial. In addition, companies such as Mesoblast and FCB have an advantages over MSCs therapeutic products in the market. And business deals related to MSCs products are increasing in recent years, including 12 deals so far, ranging from drug development, commercial license, and patent assets sales to drug R&D cooperation in early phase. Several MSCs therapeutic products are at clinical stage, and a bright prospect can be expected for Chinese MSCs therapeutic product markets.Conclusion:Although MSCs therapeutic product market still at its preliminary stage, the market potential is considerably huge since the fast-developing technologies, enormous market demand as well as the high motivation of related companies in MSCs R&D and commercialization.