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中国生物工程杂志

China Biotechnology
China Biotechnology  2022, Vol. 42 Issue (7): 35-44    DOI: 10.13523/j.cb.2203068
    
Molecular Evolution of Yeast Lipase for Efficient Synthesis of (S)-1,4-Benzodioxane
Qi ZHANG**(),Lu-yao TANG**(),Yuan-zhi HE,Kai ZHANG,Jia-wei ZHU,Li CUI***(),Yan FENG***()
State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
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Abstract  

Objective: 1,4-Benzodioxane is an important chiral intermediate for antihypertensive (Proroxan and Doxazosin), antidepressant (MCK-242) and other drugs, and it displays a broad spectrum of applications in the pharmaceutical field. Currently, in spite of high-yield advantage of chemical synthesis, there are some problems of environmental pollution and low production safety. Using lipase to catalyze synthesis of 1,4-benzodioxane provides a new pathway of green synthesis of 1,4-benzodioxane. However, natural enzymes face the dilemma of poor enantioselectivity. Therefore, molecular evolution was performed on Candida antarctica lipase B, and a technical route for the catalytic synthesis of 1,4-benzodioxane was established. Methods: Firstly, the key amino acid residues involved in substrate binding and conversion in the active center of Candida antarctica lipase B were analyzed, and saturation mutagenesis libraries on the interaction sites were constructed. Improved mutants with high efficiency and high enantioselectivity were then obtained using HPLC detection. Furthermore, catalytic synthesis conditions of mutant D223N/A225K were systematically optimized. Results: The results indicated that the mutants mainly derived from the pairwise site D223/A225 (such as D223N/A225K and D223G/A225W) were biased towards the synthesis of (S)-isoforms, while most of the mutants derived from the pairwise site E188/I189 (such as E188D/I189M) showed a bias for the synthesis of (R)-isoforms. Compared with WT, the ees value of the best mutant D223N/A225K to synthesize (S)-1,4-benzodioxane was increased from 11.9% to 29.3%. After systematic optimization of the reaction conditions, an ees value of (93.9±0.16)% and a conversion rate of (47.5±2.33)% were achieved using mutant D223N/A225K to catalyze kinetic resolution of methyl (R,S)-2,3-dihydro-1,4-benzodioxin-2-carboxylate in n-butanol/phosphate buffered saline (20∶80, V/V) biphasic solvent at 37℃ for 50 min. Conclusion: An efficient kinetic resolution of methyl (R,S)-2,3-dihydro-1,4-benzodioxin-2-carboxylate was successfully achieved by molecular evolution and optimization of conditions, which provides a new example for the creation of new enzymes by protein engineering technology, and also provides a theoretical and technical foundation for the efficient synthesis of (S)-1,4-benzodioxane molecules by enzymatic methods.



Key wordsCandida antarctica lipase B      Protein engineering      1,4-Benzodioxane      Chiral resolution     
Received: 29 March 2022      Published: 03 August 2022
ZTFLH:  Q819  
Corresponding Authors: Qi ZHANG,Lu-yao TANG,Li CUI,Yan FENG     E-mail: cuili@sjtu.edu.cn;yfeng2009@sjtu.edu.cn
Cite this article:

Qi ZHANG,Lu-yao TANG,Yuan-zhi HE,Kai ZHANG,Jia-wei ZHU,Li CUI,Yan FENG. Molecular Evolution of Yeast Lipase for Efficient Synthesis of (S)-1,4-Benzodioxane. China Biotechnology, 2022, 42(7): 35-44.

URL:

https://manu60.magtech.com.cn/biotech/10.13523/j.cb.2203068     OR     https://manu60.magtech.com.cn/biotech/Y2022/V42/I7/35

Fig.1 Selection of pairwise mutation sites The blue represents site E188/I189, the green represents site D223/A225, and the orange represents the catalytic triad of CalB (S105-D187-H224)
Fig.2 Heterologous protein expression and purification of CalB and its mutants M: Protein marker; 1: Purified WT; 2-25: Purified mutants D223N/A225K, D223G/A225W, E188Q/I189T, D223S/A225W, D223G/A225Y, D223N/A225Y, D223S/A225R, D223S/A225Y, D223G/A225K, D223R/A225R, D223R/A225W, D223T/A225Y, D223S/A225M, D223G/A225I, D223T/A225W, D223T/A225R, D223T/A225F, E188S/I189Y, E188A/I189H, E188G/I189G, E188D/I189F, E188D/I189Y, E188N/I189Y, and E188D/I189M, respectively
Fig.3 Enzymatic resolution of methyl (R,S)-2,3-dihydro-1,4-benzodioxin-2-carboxylate by WT and its mutants (a) Schematic diagram of the hydrolysis of S-isomer (b) Conversion and (c) ees values of enzymatic resolution catalyzed by WT and its mutants (d) Schematic diagram of the hydrolysis of R-isomer (e) Conversion and (f) ees values of enzymatic resolution catalyzed by mutants of chiral inversion
Fig.4 Effect of temperature on reactions catalyzed by WT and its mutant (a) Conversion of kinetic resolution reaction (b) ees values of kinetic resolution reaction
Fig.5 Effect of co-solvent species on reactions catalyzed by WT and its mutant (a) Conversion of kinetic resolution reaction (b) ees values of kinetic resolution reaction
Fig.6 Effect of the percentage of co-solvent on reactions catalyzed by WT and its mutant (a) Conversion of kinetic resolution reaction (b) ees values of kinetic resolution reaction
Fig.7 Time course of enzymatic resolution catalyzed by WT and its mutant (a) Conversion of kinetic resolution reaction (b) ees values of kinetic resolution reaction
[1]   Bolchi C, Bavo F, Appiani R, et al. 1, 4-Benzodioxane, an evergreen, versatile scaffold in medicinal chemistry: a review of its recent applications in drug design. European Journal of Medicinal Chemistry, 2020, 200: 112419.
doi: 10.1016/j.ejmech.2020.112419
[2]   Pilkington L I, Barker D. Synthesis and biology of 1, 4-benzodioxane lignan natural products. Natural Product Reports, 2015, 32(10): 1369-1388.
doi: 10.1039/c5np00048c pmid: 26150088
[3]   Avagyan A S, Vardanyan S O, Sargsyan A B, et al. Synthesis and antibacterial activity of new oxadiazolylbenzodioxane derivatives. Russian Journal of Organic Chemistry, 2020, 56(3): 385-389.
doi: 10.1134/S1070428020030033
[4]   Nelson W L, Wennerstrom J E, Dyer D C, et al. Absolute configuration of glycerol derivatives. 4. synthesis and pharmacological activity of chiral 2-alkylaminomethylbenzodioxans, competitive α-adrenergic antagonists. Journal of Medicinal Chemistry, 1977, 20(7): 880-885.
pmid: 17749
[5]   Campbell S F, Hardstone J D, Palmer M J. 2, 4-Diamino-6, 7-dimethoxyquinoline derivatives as alpha 1-adrenoceptor antagonists and antihypertensive agents. Journal of Medicinal Chemistry, 1988, 31(5): 1031-1035.
pmid: 2896245
[6]   Ma S P, Ren L M, Zhao D, et al. Chiral selective effects of doxazosin enantiomers on blood pressure and urinary bladder pressure in anesthetized rats. Acta Pharmacologica Sinica, 2006, 27(11): 1423-1430.
doi: 10.1111/j.1745-7254.2006.00443.x
[7]   Niu C Q, Zhao D, Jia X M, et al. α1-Adrenoceptor antagonist profile of doxazosin and its enantiomers in isolated rabbit blood vessels. Chinese Journal of Pharmacology and Toxicology, 2003, 17(5): 354-359.
[8]   Patel S D, Habeski W M, Min H, et al. Identification and SAR around N-{2-[4-(2, 3-dihydro-benzo[1, 4]dioxin-2-ylmethyl)-[1, 4]diazepan-1-yl]-ethyl}-2-phenoxy-nicotinamide, a selective α2C adrenergic receptor antagonist. Bioorganic & Medicinal Chemistry Letters, 2008, 18(20): 5689-5693.
doi: 10.1016/j.bmcl.2008.08.055
[9]   Turner N J. Enzyme catalysed deracemisation and dynamic kinetic resolution reactions. Current Opinion in Chemical Biology, 2004, 8(2): 114-119.
doi: 10.1016/j.cbpa.2004.02.001
[10]   Alkadi H, Jbeily R. Role of chirality in drugs: an overview. Infectious Disorders Drug Targets, 2018, 18(2): 88-95.
doi: 10.2174/1871526517666170329123845
[11]   Chen F X, Bai Q X, Wang Q F, et al. Stereoselective pharmacokinetics and chiral inversions of some chiral hydroxy group drugs. Current Pharmaceutical Biotechnology, 2020, 21(15): 1632-1644.
doi: 10.2174/1389201021666200727144053
[12]   Rouf A, Gupta P, Aga M A, et al. Chemoenzymatic synthesis of piperoxan, prosympal, dibozane, and doxazosin. Tetrahedron: Asymmetry, 2012, 23(22-23): 1615-1623.
doi: 10.1016/j.tetasy.2012.10.018
[13]   Varma R, Kasture S M, Nene S, et al. Lipases catalyzed enantioselective hydrolysis of (R, S)-methyl 1, 4-benzodioxan-2-carboxylate intermediate for (S)-doxazosin mesylate. World Journal of Microbiology and Biotechnology, 2008, 24(4): 577-579.
doi: 10.1007/s11274-007-9504-6
[14]   Sikora A, Tarczykowska A, Chałupka J, et al. Kinetic resolution of a b-adrenolytic drug with the use of lipases as enantioselective biocatalysts. Medical Research Journal, 2018, 3(1): 38-42.
doi: 10.5603/MRJ.2018.0007
[15]   Wu J, Wang H J, Yang B, et al. Efficient production of (R)-3-TBDMSO glutaric acid methyl monoester by manipulating the substrate pocket of Pseudozyma antarctica lipase B. RSC Advances, 2017, 7(61): 38264-38272.
doi: 10.1039/C7RA06016E
[16]   Yang B, Wang H J, Song W, et al. Engineering of the conformational dynamics of lipase to increase enantioselectivity. ACS Catalysis, 2017, 7(11): 7593-7599.
doi: 10.1021/acscatal.7b02404
[17]   Marton Z, Léonard-Nevers V, Syrén P O, et al. Mutations in the stereospecificity pocket and at the entrance of the active site of Candida antarctica lipase B enhancing enzyme enantioselectivity. Journal of Molecular Catalysis B: Enzymatic, 2010, 65(1-4): 11-17.
doi: 10.1016/j.molcatb.2010.01.007
[18]   Shen J W, Qi J M, Zhang X J, et al. Significantly increased catalytic activity of Candida antarctica lipase B for the resolution of cis-(±)-dimethyl 1-acetylpiperidine-2, 3-dicarboxylate. Catalysis Science & Technology, 2018, 8(18): 4718-4725.
[19]   Wu Z Y, Liu H, Xu L S, et al. Algorithm-based coevolution network identification reveals key functional residues of the α/β hydrolase subfamilies. The FASEB Journal, 2020, 34(2): 1983-1995.
doi: 10.1096/fj.201900948RR
[20]   Świderek K, Moliner V. Computational studies of Candida antarctica lipase B to test its capability as a starting point to redesign new diels-alderases. The Journal of Physical Chemistry B, 2016, 120(8): 2053-2070.
doi: 10.1021/acs.jpcb.5b10527
[21]   武志贇. 脂肪酶分子共进化及催化手性药物中间体合成的研究. 上海: 上海交通大学, 2020.
[21]   Wu Z Y. Lipase coevolution and its catalytic synthesis of chiral drug intermediates. Shanghai: Shanghai Jiao Tong University, 2020.
[22]   Bartsch S, Kourist R, Bornscheuer U. Complete inversion of enantioselectivity towards acetylated tertiary alcohols by a double mutant of a Bacillus subtilis esterase. Angewandte Chemie International Edition, 2008, 47(8): 1508-1511.
[23]   Kille S, Acevedo-Rocha C G, Parra L P, et al. Reducing codon redundancy and screening effort of combinatorial protein libraries created by saturation mutagenesis. ACS Synthetic Biology, 2013, 2(2): 83-92.
doi: 10.1021/sb300037w
[24]   Alejaldre L, Pelletier J N, Quaglia D. Methods for enzyme library creation: which one will You choose? BioEssays, 2021, 43(8): 2100052.
doi: 10.1002/bies.202100052
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