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中国生物工程杂志

China Biotechnology
China Biotechnology  2009, Vol. 29 Issue (08): 51-56    DOI:
    
Structure Analysis of P8 Protein of Rice Gall Dwarf Virus and it's Expression in E.coli
 GAO Fang-Luan1, FAN Guo-Cheng2, SHEN Jian-Guo2, XIE Li-Yan2, LIN Qi-Ying2, WU Zu-Jian1, XIE Lian-Hui2
1.Key Lab for Plant Virology of Fujian Province,Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou350002,China
2.Research Institute of Pomology, Fujian Academy of Agricultural Sciences, Fuzhou350013,China
3.Fujian ExitEntry Inspection and Quarantine Bureau, Fuzhou350001,China
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Abstract  

To elucidate structural characters and expression characters of RGDV P8 protein in E.coli, bioinformatics analysis were performed by using biology software and analysis tools online.P8 gene was successfully amplified by RT-PCR and inserted to pGEX-4T-1 expression vector. The protein was then expressed in E.coli BL21(DE3) with IPTG induction. The antiserum was produced by immunizing rabbit with fusion protein, and the specificity of antiserum was evaluated by detecting RGDV, RDV, RSV, RRSV. Analysis showed that P8 protein had a typical transmembrane helices region, and a Phytoreo P8 domain shared with Phytoreo P8 family. SDSPAGE and Western blotting analysis showed that molecular weight of P8 fusion protein was about 73 kDa. P8 protein was efficiently expressed in the form of inclusion body. The antiserum with high titer and specificity provides the basis for detecting RGDV and studying function of P8 protein.



Key wordsRice gall dwarf virus;P8 protein Structure analysis;Fusion Protein;Antiserum     
Received: 19 March 2009      Published: 28 July 2009
ZTFLH:  Q789  
Cite this article:

GAO Fang-Luan, FAN Guo-Cheng, CHEN Jian-Guo, XIE Li-Yan, LIN Ai-Yang, TUN Jie-Jian, XIE Lian-Hui. Structure Analysis of P8 Protein of Rice Gall Dwarf Virus and it's Expression in E.coli. China Biotechnology, 2009, 29(08): 51-56.

URL:

https://manu60.magtech.com.cn/biotech/     OR     https://manu60.magtech.com.cn/biotech/Y2009/V29/I08/51

[1] Zhang H M,Yang J,Xin X,et al. Molecular characterization of the genome segments S4, S6 and S7 of rice gall dwarf virus. Archives of Virology,2007,152(9):1593~1602
[2] 范国成,吴祖建,林奇英,等.水稻瘤矮病毒基因组S8片段全序列测定及其结构分析.农业生物技术学报,2005,13(5): 679~683
Fan G C,Wu Z J,Lin Q Y,et al.Journal of Agricultural Biotechnology,2005,13(5):679~683
[3] Omura T,Inoue H,Saito Y. Purification and some properties of rice gall dwarf virus, a new Phytoreovirus. Phytopathology,1982,72:1246~1249
[4] Omura T,Inoue H. Rice gall dwarf virus. CMI/AAB, Descriptions of Plant Viruses,1985, (296):4
[5] 范怀忠,谢大双,何显大,等.水稻瘤矮病—广东湛江新发生的一种水稻病毒病.植物病理学报,1983, 13(4):1~6
Fan H Z,Xie D S,He X D, et al.Acta Phytopathologica Sinica,1983, 13(4):1~6
[6] Hibi T,Omura T,Saito Y. Double~stranded RNA of rice gall dwarf virus. Journal of General Virology,1984, 65:1585~1590
[7] Moriyasu Y,MaruyamaFunatsuki W. Molecular analysis of the genome segments S1, S4, S6, S7 and S12 of a rice gall dwarf virus isolate from Thailand; completion of the genomic sequence. Archives of Virology,2007, 152(7):1315~1322
[8] 范国成,吴祖建,林奇英,等.中国水稻瘤矮病毒基因组片段S3、S8S11克隆及其序列分析.云南农业大学学报, 2003, 18(4):6~7
Fan G C,Wu Z J,Lin Q Y, et al.Journal of Yunnan Agriculture University,2003, 18(4):6~7
[9] 范国成,吴祖建,黄明华,等.水稻瘤矮病毒基因组S9片段的基因结构特征.中国病毒学,2005, 20(5): 539~542
Fan G C,Wu Z J,Huang M H,et al.Virologica Sinica,2005, 20(5):539~542
[10] Zhang H M,Yang J,Xin X,et al. Molecular characterization of the largest and smallest genome segments, S1 and S12, of rice gall dwarf virus. Virus Genes,2007, 35(3):815~823
[11] Liu F X,Ruan X L,He Y,et al. Complete nucleotide sequence of rice gall dwarf virus genome segment S7. Archives of Virology,2007,152(6):1233~1235
[12] 刘福秀,阮小蕾,何云蔚,等. 水稻瘤矮病毒基因组第6片段(S6)序列测定与分析.中国农业科学,2007,40(11):2474~2480
Liu F X, Ruan X L,He Y W,et al.Scientia Agricultura Sinica,2007,40(11):2474~2480
[13] Omura T,Hibino H,Inoue H,et al. Particles of rice gall dwarf virus in thin sections of diseased rice plants and insect vection cell. Journal of General Virology,1985,66:2581~2587
[14] http://www.ncbi.nlm.nih.gov/projects/gorf/
[15] Gish W,States D J. Identification of protein coding regions by database similarity search. Nature Genetics,1993,3:266~272
[16] Gasteiger E,Gattiker A,Hoogland C,et al. ExPASy: the proteomics server for indepth protein knowledge and analysis. Nucleic Acids Research,2003,31:3784~3788
[17] http://www.cbs.dtu.dk/services/TMHMM
[18] Ivica L,Richard R C,Birgit P,et al. SMART 5: domains in the context of genomes and networks. Nucleic Acids Research,2006,34:257~260
[19] Cole C,Barber J D,Barton G J. The Jpred3 secondary structure prediction server, Nucleic Acids Research,2008,doi:10.1093/nar/gkn238
[20] Arnold K,Bordoli L,Kopp J,et al. The SWISSMODEL Workspace: A webbased environment for protein structure homology modelling. Bioinformatics,2006,22:195~201
[21] 谢联辉,林奇英.植物病毒学.北京:中国农业科学,2004.157~160
Xie L H,Lin Q Y. Plant Virology, Beijing: China Agriculture Press,2004.157~160
[22] Towbin H. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: Procedure and some applications. Proc Ncad Acad Sci USA,1979,76(20):4350~4356
[23] Guruprasad K,Reddy B V,Pandit M W. Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Engineering,1990,4(2):155~161
[24] Omura T,Hibino H Usugi. Detection of rice virus in plants and individual insect vectors by latex flocculation test. Plant Disease,1984,66:374~378
[25] Deng M R,Ruan X L,He Y,et al. Sequence analysis of segment 8 of five Chinese isolates of rice gall dwarf virus and expression of a main outer capsid protein in Escherichia coli. Virologica Sinica,2007,22(4):294~300
[26] 张婷婷,叶波平.包涵体蛋白质的复性研究进展.药物生物技术,2007,14(4):306~309
Zhang T T,Ye B P.Pharmaceutical Biotechnology,2007,14(4):306~309
[27] Omura T,Ishikawa K,Hirano H,et al. The outer capsid protein of rice dwarf virus is encoded by genmome segment S8. Journal of General Virology,1989,70: 2759~2764
[28] Takahashi Y,Tomiyama M,Hibino H,et al. Conserved primary structures in core capsid proteins and reassembly of core particles and outer capsids between rice gall dwarf and rice dwarf Phytoreoviruses. Journal of General Virology,1994,75:269~275
[29] Miyazaki N,Hagiwara K,Naitow H,et al. Transcapsidation and the conserved interactions of two major structural proteins of a pair of Phytoreoviruses confirm

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