|
|
|
| Review of Different DNA Extraction Methods in Hair Shafts |
| GUAN Zheng, CHEN Ai-liang |
| Institute of Quality Standard & Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing 100081, China |
|
|
|
Abstract Hair shaft can be a valuable source of DNA for the noninvasive study of human and nonhuman populations because it’s easy to get, transport and store. However, hair shafts contain extremely small quantities of DNA but a large quantity of impurities like keratin and pigment, making the method used to extract the DNA of paramount importance. In order to provide sufficient documentation to help hair shaft DNA extraction, a review of recent 30 years literatures on procedures for obtaining DNA from hair shaft was presented and some conclusions for high efficiency DNA extraction in hair shaft were drawed.
|
|
Received: 02 July 2012
Published: 25 October 2012
|
|
|
|
|
[1] Bradfield R B, Gray S O. Letter: simplified procedure for field preparation of hair DNA specimens. Lancet,1975,1(7903):406-409.
[2] Higuchi R, Vonberoldingen C H, Sensabaugh G F, et al. DNA typing from single hairs. Nature,1988,332(6164):543-546.
[3] Mcnevin D, Wilson-Wilde L, Robertson J, et al. Short tandem repeat (str) genotyping of keratinised hair-part 1. Review of current status and knowledge gaps. Forensic Science International, 2005,153(2-3):237-246.
[4] Nozawa H, Yamamoto T, Uchihi R, et al. Purification of nuclear DNA from single hair shafts for DNA analysis in forensic sciences. Legal Medicine (Tokyo, Japan).1999,1:61-67.
[5] Uchihi R, Tamaki K, Kojima T, et al. Deoxyribonucleic-acid (DNA) typing of human-leukocyte antigen (hla)-dqa1 from single hairs in Japanese. Journal of Forensic Sciences,1992,37(3):853-859.
[6] Linch C, Whiting D, Holland M. Human hair histogenesis for the mitochondrial DNA forensic scientist. Journal of Forensic Sciences, 2001,46(4): 844-853.
[7] Kalbe J, Kuropka R, Meyer-Stork L S, et al. Isolation and characterization of high-molecular mass DNA from hair shafts. Biol Chem, 1988,369:413-416.
[8] 苏一,边连全,宣之兴. 猪毛干部位基因组DNA的三种提取方法比较. 湖北农业科学,2010(10):2337-2340. Su Y, Bian L Q, Xuan Z X. Comparison of three DNA extraction methods from the hair shaft of swine.Hubei Agricultural Science, 2010(10): 2337-2340.
[9] 白梅. 辽宁地区汉族人群D17S518基因座多态性及其毛发检材的应用研究. 北京:中国医科大学,2008. Bai M. Study on geneticploymorphism of D17S518 in Liaoning Han population andits application in hair samples. Beijing:China Medical University, 2008.
[10] Wilson A S, Dixon R A, Dodson H I, et al. Yesterday’s hair -human hair in archaeology. Biologist,2001,48(5):213-217.
[11] Gilbert M, Menez L, Janaway R C, et al. Resistance of degraded hair shafts to contaminant DNA. Forensic Science International,2006,156(2-3): 208-212.
[12] Barnes I, Matheus P, Shapiro B, et al. Dynamics of pleistocene population extinctions in beringian brown bears. Science,2002,295(22): 2267-2270.
[13] Thomas M, Gilbert P, Wilson A S, et al. Ancient mito-chondria DNA from hair. Current Biology,2004,14(12):R463-R464.
[14] Clack A A, Macphee R D, Poinar H N. Mylodon darwinii DNA sequences from ancient fecal hair shafts. Annals of Anatomy-Anatomischer Anzeiger,2012,194(1):26-30.
[15] Jehaes E, Gilissen A, Cassiman J J, et al. Evaluation of a decontamination protocol for hair shafts before mtDNA sequencing. Forensic Science International,1998,94(1-2):65-71.
[16] Vigilant L, Penningtoni R, Harpendingt H, et al. Mitochondrial DNA sequences in single hairs from a Southern African population. Proc Natl Acad Sci USA,1989,86:9350-9354.
[17] Schreiber A, Amtmann E, Storch V, et al. The extraction of high-molecular-mass DNA from hair shafts. Febs Letters,1988,230(1-2): 209-211.
[18] Gilbert M, Janaway R C, Tobin D J, et al. Histological correlates of postmortem mitochondrial DNA damage in degraded hair. Forensic Science International,2006,156(2-3):201-207.
[19] Mcnevin D, Wilson-Wilde L, Robertson J, et al. Short tandem repeat (str) genotyping of keratinised hair -part 2. An optimised genomic DNA extraction procedure reveals donor dependence of str profiles. Forensic Science International,2005,153(2-3):247-259.
[20] 胡钰娟,孔维佳,韩月臣,等. 提取大鼠毛发核酸3种方法的比较. 临床耳鼻咽喉科杂志,2004(5):288-291. Hu Y J, Kong W J, Han Y C, et al. The comparison of three ways for extracting nucleic acid from rat’s hair. J Clin Otorhinolaryngol(China), 2004(5): 288-291.
[21] 陈青,马力宏,张纯斌. 人类运动能力的遗传学研究新方法——单根毛发中线粒体DNA RFLP分析. 中国运动医学杂志,1999,18(1):44-45. Chen Q, Ma L H,Zhang C B. A method for genetic study of human exercise capacity——the RFLP analysis of mitochondrial DNA from a single hair. Chinese Journal of Sports Medicine, 1999,18(1):44-45.
[22] 高林林,唐晖,严江伟,等. 染色毛干mtDNA不同提取方法的研究. 中国法医学杂志,2006(5):284-286. Gao L L, Tang H, Yan J W, et al. A study of methods extracting mtDNA from coloring hair shafts. Chin J Forensic Med, 2006(5):284-286.
[23] 蔡大伟,于慧鑫,赵欣,等. 一种简便高效的古代动物毛皮DNA提取方法. 吉林大学学报(理学版),2010,48(4):689-693. Cai D W, Yu H X, Zhao X, et al. A simple and efficient method for DNA extraction from ancient animal dried skin. Journal of Jilin University(Science Edition), 2010,48(4):689-693.
[24] 金美菊,阮勇,严冰冰,等. 羊绒羊毛纤维线粒体DNA提取方法研究. 毛纺科技,2011,39(11):53-55. Jin M J, Ruan Y, Yan B B, et al. Extraction method of mtDNA for cashmere and wool fibers. Wool Textile Journal, 2011,39(11):53-55.
[25] 邵碧英,林志武,陈文炳,等. 快速、高效的羊绒羊毛织品DNA提取方法的建立. 生物技术,2009,19(5):38-39. Shao B Y, Lin Z W, Chen W B, et al. Development of a rapid and high effective DNA extraction method for cashmere and wool textiles.Extraction method of mtDNA for cashmere and wool fibers. Biotechnology Journal, 2009,19(5):38-39.
[26] Takayanagi K, Asamura H, Tsukada K, et al. Investigation of DNA extraction from hair shafts. Progress in Forensic Genetics,2003,9(1239):759-764.
[27] Godoy C D, Kunii I S, Funabashi K S, et al. Mitochondrial DNA in a population of individuals from the city of são paulo. DNA extraction from head and pubic hair and blood. Forensic Science International: Genetics Supplement Series,2011,3:e149-e150.
[28] Bekaert B, Larmuseau M H, Vanhove M P, et al. Automated DNA extraction of single dog hairs without roots for mitochondrial DNA analysis. Forensic Science International: Genetics,2012,6:277-281.
[29] Almeida M, Betancor E, Fregel R, et al. Efficient DNA extraction from hair shafts. Forensic Science International: Genetics Supplement Series, 2011,3: e319-e320.
[30] 黄娅琳. 一种简便的DNA提取方法在动物毛发检验中的应用. 中国司法鉴定,2008(2):25-27. Huang Y L. A simple method of DNA isolation from animal hair shaft. Chinese Journal of Forensic Sciences, 2008(2):25-27.
[31] 赵春江,李宁. 一种从毛发中提取DNA的简易方法. 遗传,2003(1):69-70. Zhao C J, Li N. A study of a brief protocol to extract DNA from hair. Hereditas, 2003(1):69-70.
[32] 刘颖,孙蓓,马彦,等. 从一根毛发中分别提取nDNA和mtDNA的简易方法. 天津医药,2008(7):510-512. Liu Y, Sun B, Ma Y, et al. The study of the DNA extraction procedure from a single hair.Tianjin Med J, 2008(7):510-512.
[33] Andreasson H, Nilsson M, Budowle B, et al. Nuclear and mitochondrial DNA quantification of various forensic materials. Forensic Science International,2006,164(1):56-64.
[34] Andréasson H, Asp A, Alderborn A, et al. Mitochondrial sequence analysis for forensic identification using pyrosequencing technology. Biotechniques,2002,32:124-133.
[35] Allen M, Engström A, Meyers S, et al. Mitochondrial DNA sequencing of shed hairs and saliva on robbery caps: sensitivity and matching probabilities. J Forensic Sci.,1998,43(3):453-464.
[36] Vigilant L. An evaluation of techniques for the extraction and amplification of DNA from naturally shed hairs. Biol Chem,1999,380: 1329-1331.
[37] 郑一诫. 发干线粒体DNA提取改良法的建立、缺失类型的筛选及其缺失量与年龄的关系. 中山大学,2009. Zheng Y J. Establishment of refbrmative mtDNA extraction methods from hair and investigation of applicability of mtDNA deletion types and amounts in human hair age estimation. Sun Yat-Sen University, 2009.
[38] 徐怀亮,汪宴廷,姚永芳,等. 藏酋猴毛干DNA的3种提取方法. 东北林业大学学报,2010(2):58-61. Xu H L, Wang Y T, Yao Y F, et al. Comparison of methods for DNA extraction from hair shaft of Macaca thibetana. Journal of Northeast Forestry University, 2010(2):58-61.
[39] Amory S, Keyser C, Crubezy E, et al. Str typing of ancient DNA extracted from hair shafts of siberian mummies. Forensic Science International, 2007,166(2-3): 218-229.
[40] Barbaro A, Cormaci P, Barbaro A. Multiplex strs amplification from hair shaft: validation study. International Congress Series,2006,1288: 676-678.
[41] Prieto L, Montesino M, Salas A, et al. The 2000-2001 gep-isfg collaborative exercise on mtDNA: assessing the cause of unsuccessful mtDNA PCR amplification of hair shaft samples. Forensic Science International, 2003,134(1): 46-53.
[42] Yoshii T, Tamura K, Ishiyama I. Presence of a PCR-inhibitor in hairs. Nihon Hoigaku Zasshi (the Japanese Journal of Legal Medicine),1992,46(5): 313-316.
[43] Heywood D M, Skinner R, Cornwell P A. Analysis of DNA in hair fibers. Journal of Cosmetic Science,2003,54(1):21-27.
[44] 凃政,陈松,李万水,等. 脱落毛发及毛干DNA的STR分型研究. 刑事技术,2011(5):3-7. Tu Z, Chen S, Li W S, et al. STR genotyping of tolegen hairs and hair shafts. Forensic Science and Technology, 2011(5):3-7.
[45] Wilson M R, Dizinno J A, Polanskey D, et al. Validation of mitochondrial DNA sequencing for forensic casework analysis. International Journal of Legal Medicine,1995,108:68-74.
[46] Brandstatter A, Parson W. Mitochondrial DNA heteroplasmy or artefacts -a matter of the amplification strategy? International Journal of Legal Medicine,2003,117(3):180-184.
[47] Poinar H N. The top 10 list: criteria of authenticity for DNA from ancient and forensic samples. International Congress Series,2003,1239: 575-579.
[48] Crespillo M, Paredes M R, Prieto L, et al. Results of the 2003-2004 gep-isfg collaborative study on mitochondrial DNA: focus on the mtDNA profile of a mixed semen-saliva stain. Forensic Science International, 2006,160:157-167. |
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
| |
Shared |
|
|
|
|
| |
Discussed |
|
|
|
|
