Please wait a minute...

中国生物工程杂志

China Biotechnology
China Biotechnology  2009, Vol. 29 Issue (11): 66-69    DOI:
    
Bridge PCR,An Easy Way for Concatemerizing DNA Tags
MAO Jian-ping**,WANG Quan-hui,ZHOU Ying,FANG Jing,CUI Yu-fang
Institute of Radiation Medicine,Beijing 100850, China
Download: HTML   PDF(496KB) HTML
Export: BibTeX | EndNote (RIS)      

Abstract  

In MAST (mRNA accessible site tagging), the DNA tags from synthesized library were employed for identifying mRNA accessible sites. A large number of tags were amplified and subcloned for sequencing to verify mRNA binding profiles. A PCR was designed by using one primer which bridges over the tag terminal sequences. In PCR reaction DNA tag fragments were concatemerized by a bridge primer in reaction cycles. The concatemerized tag fragments were subcloned and sequenced. Dozens of the concatemerized sequences contained thousands tags. The PCR was a simple, effective way which for sequencing tags in a high through put manner



Key wordsBioreactor      Mouse embryonic stem cells      Embryoid body      Cardiomyocytes      Differentiation     
Received: 03 August 2009      Published: 07 December 2009
ZTFLH:  Q75  
Cite this article:

MAO Jian-Beng, WANG Quan-Hui, ZHOU Ying, FANG Jing, CUI Yu-Fang. Bridge PCR,An Easy Way for Concatemerizing DNA Tags. China Biotechnology, 2009, 29(11): 66-69.

URL:

https://manu60.magtech.com.cn/biotech/     OR     https://manu60.magtech.com.cn/biotech/Y2009/V29/I11/66

[1]   Zhang H, Mao J, Zhou D, et al. mRNA accessible site tagging (MAST): a novel high throughput method for selecting effective antisense oligonucleotides. Nucleic Acids Research, 2003, 31: e72
[2]   Mao J, Liang Z, Mao B. For mRNA accessible sites selecting: a comparative study between MAST and computational prediction. Chinese Journal of Biochemistry and Molecular Biology, 2004, 20(3) :399~407
[3]   Dominic G S, Alexandra K B, Amy C R, et al. Tandem arrayed ligation of expressed sequence tags (TALEST): a new method for generating global gene expression profiles. Nucleic Acids Research, 1999, 27:e22
[4]   Larry G. Oligonucleotides as research, diagnostic, and therapeutic agents. The Journal of Biological Chemistry, 1995, 270(23):13581~13584
[5]   Singer B S, Shtatland T, Brown D et al. Libraries for genomic SELEX. Nucleic Acids Research, 1997, 25:781~786
[6]   Kopylov A M, Spiridonova V A. Combinatorial chemistry of nucleic acids: SELEX. Molecular Biology, 2000, 34(6):1097
[7]   Pan W, Devlin H, Kelley C, et al. A selection system for identifying accessible sites in target RNAs. RNA, 2001, 6:610~621
[8]   Pan W, Xin P, Bui V, and Clawson G. Rapid identification of efficient target cleavage sites using a hammerhead ribozyme library in an iterative manner. Molecular Therapy, 2003, 7(1):129
[9]   Victor E V, Zhang L, Vogelstein B, et al. Serial analysis of gene expression. Science, 1995, 270:484~487
[10]   Zhang L, Zhou W, Velculescu V. et al. Gene expression profiles in normal and cancer cells. Science, 1997, 276:1268~1272
[1] WANG Hui-lin,ZHOU Kai-qiang,ZHU Hong-yu,WANG Li-jing,YANG Zhong-fan,XU Ming-bo,CAO Rong-yue. Research Progress of Human Coagulation Factor VII and the Recombinant Expression Systems[J]. China Biotechnology, 2021, 41(2/3): 129-137.
[2] LIU Tian-yi,FENG Hui,SALSABEEL Yousuf,XIE Ling-li,MIAO Xiang-yang. Research Progress of lncRNA in Animal Fat Deposition[J]. China Biotechnology, 2021, 41(11): 82-88.
[3] ZHAO Jiu-mei,WANG Zhe,LI Xue-ying. Role of Signal Pathways and Related Factors Regulating Cartilage Formation in Bone Differentiation of Bone Marrow Mesenchymal Stem Cells[J]. China Biotechnology, 2021, 41(10): 62-72.
[4] JIN Lu,ZHOU Hang,CAO Yun,WANG Zhou-shou,CAO Rong-yue. Research on Applications of High-Throughput Perfusion Models in Bioprocessing Development[J]. China Biotechnology, 2020, 40(8): 63-73.
[5] CHEN Fei,WANG Xiao-bing,XU Zeng-hui,QIAN Qi-jun. Molecular Mechanism and Clinical Research Progress of Mesenchymal Stem Cells in the Treatment of Diabetes Mellitus[J]. China Biotechnology, 2020, 40(7): 59-69.
[6] GU Hao,GUO Xin-yu,DU Jing-jing,ZHANG Pei-wen,WANG Ding-guo,LIAO Kun,ZHANG Shun-hua,ZHU Li. The Effect of miR-186-5p on the Proliferation and Differentiation of 3T3-L1 Preadipocyte[J]. China Biotechnology, 2020, 40(3): 21-30.
[7] Hang Hai-ying,Liu Chun-chun,Ren Dan-dan. Development, Application and Prospection of Flow Cytometry[J]. China Biotechnology, 2019, 39(9): 68-83.
[8] LIANG Zhen-xin,LIU Fang,ZHANG wei,LIU Qing-you,LI Li. The Preparation and Validation of p185 erb B2 Human-mouse Chimeric Antibody ChAb26 Transgenic Mice Mammary Gl and Bioreactor[J]. China Biotechnology, 2019, 39(8): 40-51.
[9] ZHU Ying,FAN Meng-tian,LI Ju-qiong,CHEN Bin,ZHANG Meng-hao,WU Jing-hong,SHI Qiong. Effect of Chemokine Receptor CX3CR1 on Osteogenic Differentiation of Human Aortic Valve Interstitial Cells[J]. China Biotechnology, 2019, 39(8): 7-16.
[10] Yu CHENG,Qiong SHI,Li-qin AN,Meng-tian FAN,Gai-gai HUANG,Ya-guang WENG. BMP7 Gene Silencing Inhibits Osteogenic Differentiation of Porcine Arotic Valve Interstitial Cells Induced by Osteogenic Induction Medium[J]. China Biotechnology, 2019, 39(5): 63-71.
[11] Xin LI,Zhong-li ZHAO,Xiao-tong LUO,Yang CAO,Li-chun ZHANG,Yong-sheng YU,Hai-guo JIN. Research Progress of in the Inducers Stimulating in Differentiation of iPS Cells into Male Germ Cells[J]. China Biotechnology, 2019, 39(4): 94-100.
[12] Yu-lei GUO,Liang TANG,Rui-qiang SUN,You LI,Yi-jun CHEN. High-Throughput Micro Bioreactor Development for Biopharmaceuticals[J]. China Biotechnology, 2018, 38(8): 69-75.
[13] Wen-wen SHI,Lei ZHANG. Current Research of Micro Mechanical Environmental Effects on Mesenchymal Stem Cells’ Differentiation[J]. China Biotechnology, 2018, 38(8): 76-83.
[14] Ya-fang LI,Ying-hui ZHAO,Sai-bao LIU,Wei WANG,Wei-jun ZENG,Jin-quan WANG,Hong-yan CHEN,Qing-wen MENG. Chicken OV Promoter Expressed HA to Protect Chickens from Lethal Challenge of AIV[J]. China Biotechnology, 2018, 38(7): 67-74.
[15] Guang-ran LI,Wei WANG. Research Progress of Small Molecule Compounds in Neural Differentiation of Stem Cells[J]. China Biotechnology, 2018, 38(3): 76-80.