Please wait a minute...

中国生物工程杂志

China Biotechnology
China Biotechnology  2023, Vol. 43 Issue (12): 32-38    DOI: 10.13523/j.cb.2310062
    
Molecular Mechanisms and Detection Methods of Pathogenic Submicroscopic CNVs and Recent Advances
QUAN Bi1,ZHANG Qiang1,2,**()
1 Hematology Laboratory, Shengjing Hospital of China Medical University, Shenyang 110022, China
2 Guangxi Zhuang Autonomous Region Maternal and Child Health Hospital, Guangxi Birth Defects Prevention and Control Institute, Nanning 530000, China
Download: HTML   PDF(418KB) HTML
Export: BibTeX | EndNote (RIS)      

Abstract  

Copy number variations (CNVs) are genomic rearrangements characterized by the increase or decrease in copy numbers of genomic segments that are typically longer than a few thousand base pairs. They are submicroscopic deletions and duplications, and segmental duplications. CNVs are associated with various diseases such as human birth defects, developmental disorders, and cancer, representing one of the significant mechanisms underlying these conditions. A comprehensive understanding of CNVs in the genome is essential for better comprehension of the relationship between genes and diseases, genetic-environmental interactions, and the correlation between genomic variations and species evolution. Therefore, research on diseases related to CNVs has emerged as a critical area in medical genetics. This review summarizes the molecular mechanisms, detection methods, and recent advances in the pathogenicity of submicroscopic CNVs.



Key wordsCopy number variations      Submicroscopic CNVs      Pathogenic mechanisms      Detection methods     
Received: 08 October 2023      Published: 16 January 2024
ZTFLH:  Q75  
Cite this article:

Bi QUAN, Qiang ZHANG. Molecular Mechanisms and Detection Methods of Pathogenic Submicroscopic CNVs and Recent Advances. China Biotechnology, 2023, 43(12): 32-38.

URL:

https://manu60.magtech.com.cn/biotech/10.13523/j.cb.2310062     OR     https://manu60.magtech.com.cn/biotech/Y2023/V43/I12/32

[1]   Stankiewicz P, Lupski J R. Structural variation in the human genome and its role in disease. Annual Review of Medicine, 2010, 61: 437-455.
doi: 10.1146/annurev-med-100708-204735 pmid: 20059347
[2]   Conrad D F, Pinto D, Redon R, et al. Origins and functional impact of copy number variation in the human genome. Nature, 2010, 464(7289): 704-712.
doi: 10.1038/nature08516
[3]   Völker M, Backström N, Skinner B M, et al. Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution. Genome Research, 2010, 20(4): 503-511.
doi: 10.1101/gr.103663.109 pmid: 20357050
[4]   Lupski J R, Wise C A, Kuwano A, et al. Gene dosage is a mechanism for Charcot-Marie-Tooth disease type 1A. Nature Genetics, 1992, 1(1): 29-33.
doi: 10.1038/ng0492-29 pmid: 1301995
[5]   Chance P F, Abbas N, Lensch M W, et al. Two autosomal dominant neuropathies result from reciprocal DNA duplication/deletion of a region on chromosome 17. Human Molecular Genetics, 1994, 3(2): 223-228.
pmid: 8004087
[6]   Rice A M, McLysaght A. Dosage sensitivity is a major determinant of human copy number variant pathogenicity. Nature Communications, 2017, 8(1): 1-11.
doi: 10.1038/s41467-016-0009-6
[7]   Kleinjan D A, van Heyningen V. Long-range control of gene expression: emerging mechanisms and disruption in disease. The American Journal of Human Genetics, 2005, 76(1): 8-32.
doi: 10.1086/426833
[8]   Lauderdale J D, Wilensky J S, Oliver E R, et al. 3' deletions cause aniridia by preventing PAX6 gene expression. Proceedings of the National Academy of Sciences of the United States of America, 2000, 97(25): 13755-13759.
[9]   Zhu H W, Shang D D, Sun M, et al. X-linked congenital hypertrichosis syndrome is associated with interchromosomal insertions mediated by a human-specific palindrome near SOX3. The American Journal of Human Genetics, 2011, 88(6): 819-826.
doi: 10.1016/j.ajhg.2011.05.004
[10]   Henrichsen C N, Chaignat E, Reymond A. Copy number variants, diseases and gene expression. Human Molecular Genetics, 2009, 18(R1): R1-R8.
[11]   Kurotaki N, Shen J J, Touyama M, et al. Phenotypic consequences of genetic variation at hemizygous alleles: Sotos syndrome is a contiguous gene syndrome incorporating coagulation factor twelve (FXII) deficiency. Genetics in Medicine, 2005, 7(7): 479-483.
doi: 10.1097/01.gim.0000177419.43309.37 pmid: 16170239
[12]   Wu N, Ming X, Xiao J Q, et al. TBX6 null variants and a common hypomorphic allele in congenital scoliosis. New England Journal of Medicine, 2015, 372(4): 341-350.
doi: 10.1056/NEJMoa1406829
[13]   Claudia B, Warren A Y, Kit L W, et al. The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostates. Molecular Cancer, 2022, 21(1): 183.
doi: 10.1186/s12943-022-01644-3 pmid: 36131292
[14]   Huang Y C, Huang C P, Lin C P, et al. Naturally occurring bicoumarin compound daphnoretin inhibits growth and induces megakaryocytic differentiation in human chronic myeloid leukemia cells. Cells, 2022, 11(20): 3252.
doi: 10.3390/cells11203252
[15]   Yin W, Guo M, Tang Z Y, et al. MET expression level in lung adenocarcinoma loosely correlates with MET copy number gain/amplification and is a poor predictor of patient outcome. Cancers, 2022, 14(10): 2433.
doi: 10.3390/cancers14102433
[16]   Galluccio N, Ruzzo A, Canestrari E, et al. C-MET gene copy number variation (CNV) analysis by quantitative PCR (qPCR) assay in Caucasian patients with gastric cancer (GC). Journal of Clinical Oncology, 2011, 29(15_suppl): 4038.
doi: 10.1200/jco.2011.29.15_suppl.4038
[17]   D’haene B, Vandesompele J, Hellemans J. Accurate and objective copy number profiling using real-time quantitative PCR. Methods, 2010, 50(4): 262-270.
doi: 10.1016/j.ymeth.2009.12.007 pmid: 20060046
[18]   Yu H, Park J, Kim S, et al. Association of vascular endothelial growth factor and Htra1 gene copy number variation with age related macular degeneration in the Korean population. Investigative Ophthalmology & Visual Science, 2011, 52: 5261.
[19]   朱丽娜, 王艳, 彭薇, 等. 智力障碍儿童的亚端粒拷贝数变异检测. 中国当代儿科杂志, 2015, 17(12): 1273-1276.
[19]   Zhu L N, Wang Y, Peng W, et al. Detection of subtelomeric copy number variations in children with intellectual disability. Chinese Journal of Contemporary Pediatrics, 2015, 17(12): 1273-1276.
[20]   Vermeesch J R, Balikova I, Schrander-Stumpel C, et al. The causality of de novo copy number variants is overestimated. European Journal of Human Genetics: EJHG, 2011, 19(11): 1112-1113.
doi: 10.1038/ejhg.2011.83
[21]   Wang J, Chen L, Zhou C, et al. Prospective chromosome analysis of 3429 amniocentesis samples in China using copy number variation sequencing. American Journal of Obstetrics and Gynecology, 2018, 219(3): 287.e1-287.e18.
[22]   Mankos M, Shadman K, et al. Progress toward an aberration-corrected low energy electron microscope for DNA sequencing and surface analysis. Journal of Vacuum Science and Technology B, Nanotechnology & Microelectronics: Materials, Processing, Measurement, & Phenomena: JVST B, 2012, 30(6): 6F402.
[23]   中华医学会医学遗传学分会临床遗传学组,中国医师协会医学遗传医师分会遗传病产前诊断专业委员会,中华预防医学会出生缺陷预防与控制专业委员会遗传病防控学组. 低深度全基因组测序技术在产前诊断中的应用专家共识. 中华医学遗传学杂志, 2019, 36 (4): 293-296.
[23]   Clinical Genetics Group, Medical Genetics Branch, Chinese Medical Association; Professional Committee for Prenatal Diagnosis of Genetic Diseases, Medical Genetics Branch, Chinese Medical Association; Group of Genetics Disease Prevention and Control, Birth Defect Prevention and Control Committee, Chinese Society of Preventive Medicine. Expert consensus on the application of low-depth whole genome sequencing in prenatal diagnosis. Journal of Medical Genetics, 2019, 36 (4): 293-296.
No related articles found!