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| Mechanism and Applications of Bio-mineralization Induced by Sporosarcina pasteurii and Related Microorganisms |
| WU Yang1,2,3,5, LIAN Ji-jian4, YAN Yue4, QI Hao1,2,3,5 |
1. School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China;
2. Key Laboratory of Systems Bioengineering of Ministry of Education, Tianjin University, Tianjin 300072, China;
3. SynBio Research Platform, Collaborative Innovation Center of Chemical Science and Engineering, Tianjin University, Tianjin 300072, China;
4. State Key Laboratory of Hydraulic Engineering Simulation and Safety, Tianjin University, Tianjin 30072, China;
5. Frontier Technology Research Institute, Tianjin University, Tianjin 30072, China |
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Abstract As known so far, Sporosarcina pasteurii, or formally termed as Bacillus pasteurii, was considered as one of the most efficient biosystem which is capable of inducing biological mineralization through breaking down urea. Taking advantage of the ‘super power’ of bio-mineralization, Sporosarcina pasteurii has been successfully utilized in application of solidifying sand as a novel biological construction technology, termed as ‘bio-cementation’. Due to the nature of Sporosarcina pasteurii isolated from soil, non-pathogenicity has been observed, it was considered as a very environmentally friendly method. Recently, Sporosarcina pasteurii has been further applied into fields including environmental improvement and biomedicine. However, the mechanism under the strong Sporosarcina pasteurii mediated bio-mineralization is still not well understood. Here, the knowledge and the up-to-date studies about the biological mechanism of Sporosarcina pasteurii mediated bio-mineralization, and the utilization in construction, environment, and biomedicine are reviewed.
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Received: 02 May 2017
Published: 25 August 2017
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[1] Bhaduri S, Debnath N, Mitra S, et al. Microbiologically Induced Calcite Precipitation Mediated by Sporosarcina pasteurii[J]. Journal of Visualized Experiments, 2016,2016(110):e53253-e53253.
[2] Rahman F, Afroz S, Efaz I H, et al. Application of microbiologically induced precipitation process in cement and concrete research:A review. Int. Conf. on Advances in Civil Infrastructure and Construction Materials, MIST, Dhaka, Bangladesh, 2015,2015(1):1-8.
[3] Zhu T, Dittrich M. Carbonate precipitation through microbial activities in natural environment, and their potential in biotechnology:A review. Frontiers in Bioengineering and Biotechnology, 2016, 4(4):4.
[4] Macherone A, Ranganathan N, Patel B, et al. Bacillus pasteurii:A small microbe with huge potential. Journal of The American Society of Nephrology, 2002,13(1):766.
[5] Bernardi D, Dejong J T, Montoya B M, et al. Bio-bricks:Biologically cemented sandstone bricks. Construction and Building Materials, 2014, 55(2):462-469.
[6] Karplus P A, Pearson M A, Hausinger R P. 70 years of crystalline urease:what have we learned?. Accounts of Chemical Research, 1997, 30(8):330-337.
[7] Holm L, Sander C. An evolutionary treasure:unification of a broad set of amidohydrolases related to urease. Proteins:Structure, Function, and Bioinformatics, 1997, 28(1):72-82.
[8] Benini S, Cianci M, Mazzei L, et al. Fluoride inhibition of Sporosarcina pasteurii urease:structure and thermodynamics. Journal of Biological Inorganic Chemistry, 2014, 19(8):1243-1261.
[9] Anbu P, Kang C H, Shin Y J, et al. Formations of calcium carbonate minerals by bacteria and its multiple applications. Springerplus, 2016, 5(1):250.
[10] Dhami N K, Reddy M S, Mukherjee A. Biomineralization of calcium carbonates and their engineered applications:a review. Front Microbiol, 2013, 4(314):314.
[11] Dharmakeerthi R, Thenabadu M. Urease activity in soils:A review. Journal of the National Science Foundation of Sri Lanka, 2013, 24(3):159-195.
[12] Yatsunenko T, Rey F E, Manary M J, et al. Human gut microbiome viewed across age and geography. Nature, 2012, 486(7402):222-227.
[13] Whiffin V S. Microbial CaCO3 precipitation for the production of biocement. Australia:Murdoch University, 2004.
[14] Talaiekhozani A, Keyvanfar A, Andalib R, et al. Application of Proteus mirabilis and Proteus vulgarismixture to design self-healing concrete. Desalination and Water Treatment, 2013, 52(19-21):3623-3630.
[15] Salama N R, Hartung M L, Muller A. Life in the human stomach:persistence strategies of the bacterial pathogen Helicobacter pylori. Nature Reviews Microbiology, 2013, 11(6):385-399.
[16] Onal Okyay T, Frigi Rodrigues D. High throughput colorimetric assay for rapid urease activity quantification. Journal of Microbiological Methods, 2013, 95(3):324-326.
[17] Lauchnor E G, Topp D M, Parker A E, et al. Whole cell kinetics of ureolysis by Sporosarcina pasteurii. Journal of Applied Microbiology, 2015, 118(6):1321-1332.
[18] Braissant O, Verrecchia E P, Aragno M. Is the contribution of bacteria to terrestrial carbon budget greatly underestimated?. Naturwissenschaften, 2002, 89(8):366-370.
[19] Tiwari P K, Joshi K, Rehman R, et al. Draft genome sequence of urease-producing Sporosarcina pasteurii with potential application in biocement production. Genome Announcements, 2014, 2(1):1-2.
[20] Liu X, Zhang Q, Zhou N, et al. Expression of an acid urease with urethanase activity in E. coli and analysis of urease gene. Molecular Biotechnology, 2017:,59(2-3):84-97.
[21] Mulrooney S B, Ward S K, Hausinger R P. Purification and properties of the Klebsiella aerogenes UreE metal-binding domain, a functional metallochaperone of urease. Journal of Bacteriology, 2005, 187(10):3581-3585.
[22] Sigel A, Sigel H, Sigel R K. The Ubiquitous Roles of Cytochrome P450 Proteins:Metal Ions in Life Sciences. Vol.10. New Jersey:John Wiley & Sons, 2007.
[23] Colpas G J, Brayman T G, Ming L J, et al. Identification of metal-binding residues in the Klebsiella aerogenes urease nickel metallochaperone, UreE. Biochemistry, 1999, 38(13):4078-4088.
[24] Musiani F, Zambelli B, Stola M, et al. Nickel trafficking:insights into the fold and function of UreE, a urease metallochaperone. Journal of Inorganic Biochemistry, 2004, 98(5):803-813.
[25] Kaltwasser H, Krämer J, Conger W. Control of urease formation in certain aerobic bacteria. Archiv für Mikrobiologie, 1972, 81(2):178-196.
[26] Carter E L, Boer J L, Farrugia M A, et al. The function of UreB in Klebsiella aerogenes urease. Biochemistry, 2011, 50(43):9296.
[27] Huang S C, Chen Y Y. Role of VicRKX and GlnR in pH-dependent regulation of the Streptococcus salivarius 57.I urease operon. mSphere, 2016, 1(3).
[28] Huang S C, Burne R A, Chen Y Y. The pH-dependent expression of the urease operon in Streptococcus salivarius is mediated by CodY. Applied and Environmental Microbiology, 2014, 80(17):5386-5393.
[29] Mörsdorf G, Kaltwasser H. Ammonium assimilation in Proteus vulgaris, Bacillus pasteurii, and Sporosarcina ureae. Archives of Microbiology, 1989, 152(2):125-131.
[30] Mobley H, Island M D, Hausinger R P. Molecular biology of microbial ureases. Microbiological Reviews, 1995, 59(3):451-480.
[31] Al-Thawadi S M. Ureolytic bacteria and calcium carbonate formation as a mechanism of strength enhancement of sand. J Adv Sci Eng Res, 2011, 1(1):98-114.
[32] Sazanov L A. A giant molecular proton pump:structure and mechanism of respiratory complex I. Nature Reviews Molecular Cell Biology, 2015, 16(6):375-388.
[33] Casey J R, Grinstein S, Orlowski J. Sensors and regulators of intracellular pH. Nature Reviews Molecular Cell Biology, 2010, 11(1):50-61.
[34] Cuzman O A, Richter K, Wittig L, et al. Alternative nutrient sources for biotechnological use of Sporosarcina pasteurii. World Journal of Microbiology and Biotechnology, 2015, 31(6):897-906.
[35] Talaiekhozan A, Keyvanfar A, Shafaghat A, et al. A review of self-healing concrete research development. Journal of Environmental Treatment Techniques, 2014, 2(1):1-11.
[36] Stabnikov V, Jian C, Ivanov V, et al. Halotolerant, alkaliphilic urease-producing bacteria from different climate zones and their application for biocementation of sand. World Journal of Microbiology and Biotechnology, 2013, 29(8):1453-1460.
[37] Jonkers H M, Thijssen A, Muyzer G, et al. Application of bacteria as self-healing agent for the development of sustainable concrete. Ecological Engineering, 2010, 36(2):230-235.
[38] Jonkers H. Self healing concrete:a biological approach. Self Healing Materials, 2008,100(1):195-204.
[39] Dhami N K, Reddy M S, Mukherjee A. Synergistic role of bacterial urease and carbonic anhydrase in carbonate mineralization. Applied Biochemistry and Biotechnology, 2014, 172(5):2552-2561.
[40] Mukherjee A, Dhami N K, Reddy B, et al. Bacterial calcification for enhancing performance of low embodied energy soil-cement bricks. Proceedings Third International Conference on Sustainable Construction Materials and Technologies, Kingston.2013.
[41] Lokier S, Krieg Dosier G. A quantitative analysis of microbially-induced calcite precipitation employing artificial and naturally-occurring sediments. EGU General Assembly Conference Abstracts, 2013,15(1):1-8.
[42] Dejong J T, Fritzges M B, Nüsslein K. Microbially induced cementation to control sand response to undrained shear. Journal of Geotechnical and Geoenvironmental Engineering, 2006, 132(11):1381-1392.
[43] Marjadi D S. Conservation and restoration of cultural heritage:A biotechnological approach. Advances in Applied Science Research, 2016, 7(4):159-167.
[44] Reddy M S. Biomineralization of calcium carbonates and their engineered applications:a review. Frontiers in Microbiology, 2013, 4(314):314.
[45] Li M, Cheng X, Guo H. Heavy metal removal by biomineralization of urease producing bacteria isolated from soil. International Biodeterioration & Biodegradation, 2013, 76(1):81-85.
[46] Kang C H, Han S H, Shin Y, et al. Bioremediation of Cd by microbially induced calcite precipitation. Applied Biochemistry and Biotechnology, 2014, 172(6):2907-2915.
[47] Wong L S. Microbial cementation of ureolytic bacteria from the genus Bacillus:a review of the bacterial application on cement-based materials for cleaner production. Journal of Cleaner Production, 2015, 93(1):5-17.
[48] Warren L A, Maurice P A, Parmar N, et al. Microbially mediated calcium carbonate precipitation:implications for interpreting calcite precipitation and for solid-phase capture of inorganic contaminants. Geomicrobiology Journal, 2001, 18(1):93-115.
[49] Lauchnor E G, Schultz L N, Bugni S, et al. Bacterially induced calcium carbonate precipitation and strontium coprecipitation in a porous media flow system. Environmental Science & Technology, 2013, 47(3):1557-1564.
[50] Harkes M, Booster J, Van Paassen L, et al. Microbial induced carbonate precipitation as ground improvement method——bacterial fixation and empirical correlation CaCO3 vs strength. Proceedings of the 1st International Conference on Bio-Geo-Civil Engineering, 2008,1(1):23-25.
[51] Kraus C, Hirmas D, Roberts J. Microbially indurated rammed earth:a long awaited next phase of earthen architecture. ARCC Conference Repository, 2013,2013(1):58-65.
[52] Ranganathan N, Patel B G, Ranganathan P, et al. In vitro and in vivo assessment of intraintestinal bacteriotherapy in chronic kidney disease. Journal of theAmerican Society of Artificial Internal Organs, 2006, 52(1):70-79.
[53] Mandal A, Das K, Roy S, et al. In vivo assessment of bacteriotherapy on acetaminophen-induced uremic rats. Journal of Nephrology, 2013, 26(1):228-236.
[54] Ranganathan N, Friedman E A, Tam P, et al. Probiotic dietary supplementation in patients with stage 3 and 4 chronic kidney disease:a 6-month pilot scale trial in Canada. Current Medical Research and Opinion, 2009, 25(8):1919-1930. |
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