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中国生物工程杂志

China Biotechnology
China Biotechnology  2017, Vol. 37 Issue (2): 40-47    DOI: 10.13523/j.cb.20170207
    
A. thaliana Protein Abundance Analysis Coresponding with Elongation Efficiency
WANG Xi-guang1, WANG Juan1, ZHANG Lin2
1. Department of Biology, University of Ottawa, Ottawa, Canada K1N 6N5;
2. Agricultural Resources and Regional Planning Institute, Chinese Academy of Agricultural Science, Beijing 100081, China
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Abstract  

Protein synthesis is a complex dynamic process, its abundance is a final measurement of gene expression level. Functional important proteins are always highly expressed in most of tissues. The protein abundance of A. thaliana from PaxDB database and computed translation elongation index (ITE and CAI) of protein coding genes of A. thaliana by both DAMBE and codon W were compiled, and the correlation between protein abundance and translation elongation efficiency was analysed,especially used logarithm in the analysis. The results showed that ITE is better than orignal CAI to analysis, high expressed genes have similar expression level in different tissues in A. thaliana and there was clear correlation between protein abundance and ITE in A. thaliana.



Key wordsITE      Protein abundance      Elongation efficiency      Gene expression      CAI      Correlation analysis      A. thaliana     
Received: 20 June 2016      Published: 25 February 2017
ZTFLH:  G819  
Cite this article:

WANG Xi-guang, WANG Juan, ZHANG Lin. A. thaliana Protein Abundance Analysis Coresponding with Elongation Efficiency. China Biotechnology, 2017, 37(2): 40-47.

URL:

https://manu60.magtech.com.cn/biotech/10.13523/j.cb.20170207     OR     https://manu60.magtech.com.cn/biotech/Y2017/V37/I2/40

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