Please wait a minute...

中国生物工程杂志

China Biotechnology
China Biotechnology  2016, Vol. 36 Issue (8): 80-88    DOI: 10.13523/j.cb.20160811
    
Trypsin-resistant Improvement of Bacillus subtilis β-1,4-endoxylanase by Rational Design Based on Molecular Structure Evaluation
YU Xiao-dan1,2, WU Xiu-xiu1,2, YAO Dong-sheng1,2, LIU Da-ling1,3, XIE Chun-fang1,3
1. National Engineering Research Center of Genetic Medicine, Jinan University, Guangzhou 510632, China;
2. Institute of Microbial Technology, Jinan University, Guangzhou 510632, China;
3. Department of Bio-engineering, Jinan University, Guangzhou 510632, China
Download: HTML   PDF(1415KB) HTML
Export: BibTeX | EndNote (RIS)      

Abstract  

In the feeding process, the decomposition of the digestive tract proteases is one of the important reasons affecting the efficiency of feed enzymes. Therefore, the feed enzymes having protease resistance is a very important property. The rational design of protein modification with resistance to protease based on the method of the biocatalysis and computational chemistry was used, which has been established to improve Bacillus subtilis 168 1,4-β-endoxylanase with resistance to protease and to get the excellent properties. Single site mutation to R121 and K39 and double sites mutations to R121/K98 were utilized to get the fine properties of mutant enzymes XynAR121C, XynAR121C/K98Q and XynAK39I. Fortunately, the excellent properties were gotten finally. The optimal temperature of XynA, XynAR121C, XynAR121C/K98Q was 60℃,while XynAK39I was 40℃,and its temperature tolerance was lower than the wild type. The optimal pH of the wild and mutant enzymes was 6.0. During the treatment with simulated intestinal fluid (pH 6.8, 10mg/ml trypsin solution), the remained enzyme activity of mutants was much higher than the wild type. As for XynAR121C, its half-life period was 193 min, 1.52 times higher than XynA. As for XynAR121C/K98Q, its half-life period was 257 min, 2.02 times higher than XynA. As for XynAK39I, after incubation with simulated intestinal fluid at 40℃ for different time, its half-life period was 90 min, only 37min shorter than XynA.



Key wordsXylanase      Rational design      Trypsin-resistance      Enzyme stability     
Received: 04 March 2016      Published: 25 August 2016
ZTFLH:  Q819  
Cite this article:

YU Xiao-dan, WU Xiu-xiu, YAO Dong-sheng, LIU Da-ling, XIE Chun-fang. Trypsin-resistant Improvement of Bacillus subtilis β-1,4-endoxylanase by Rational Design Based on Molecular Structure Evaluation. China Biotechnology, 2016, 36(8): 80-88.

URL:

https://manu60.magtech.com.cn/biotech/10.13523/j.cb.20160811     OR     https://manu60.magtech.com.cn/biotech/Y2016/V36/I8/80

[1] Pandey A, Benjamin S, Soccol C R, et al. The realm of microbial lipases in biotechnology. Biotechnol Appl Biochem,1999,29(2):119-131.
[2] Wong K K, Tan L U, Saddler J N. Multiplicity of β-1, 4-xylanase in microorganism:functions and applications. Microbiol Rev, 1988, 52(3):305-317.
[3] 吕晓慧, 胡亚冬, 胡凤娟, 等. 基于易错PCR的假密环菌Armillariella tabescens MAN47β-甘露聚糖酶耐高温定向进化. 生物工程学报, 2009, 25(12):1900-1906. Lü X X, Hu Y D, Hu F J, et al. Directed evolution by error-prone PCR of Armillariella tabescens MAN47β-mannanase gene toward enhanced thermal resistance. Chin J Biotech, 2009, 25(12):1900-1906.
[4] Hirokawa K, Ichiyanagi A, Kajiyama N. Enhancement of thermostability of fungal deglycating enzymes by directed evolution. Appl Microbiol Biotechnol, 2008, 78(5):775-781.
[5] Trevizano L M, Ventorim R Z, de Rezende S T, et al. Thermostability improvement of Orpinomyces sp. xylanase by directed evolution. J Mol Catal B-Enzym, 2012, 81:12-18.
[6] Le Y L, Chen H Y, Zagursky R, et al. Thermostable DNA ligase-mediated PCR production of circular plasmid (PPCP) and its application in directed evolution via in situ error-prone PCR. DNA Res, 2013, 20(4):375-382.
[7] Lilian G S, Roberto V G, Enrique R P, et al. Site-directed mutagenesis and homology modeling indicate an important role of cysteine 439 in the stability of betaine aldehyde dehydrogenase from Pseudomonas aeruginosa. Biochimie, 2005, 87(12):1056-1064.
[8] Tanaka H, Okuno T, Moriyama S, et al. Acidophilic xylanase from Aureobasidium pullulans:efficient expression and secretion in Pichia pastoris and mutational analysis. J Biosci Bioeng, 2004, 98(5):338-343.
[9] Joo J C, Pack S P, Kim Y H, et al. Thermostabilization of Bacillus circulans xylanase:computational optimization of unstable residues based on thermal fluctuation analysis. J Biotechnol, 2011, 151(1):56-65.
[10] Al Balaa B, Brijs K, Gebruers K, et al. Xylanase XYL1p from Scytalidium acidophilum:site-directed mutagenesis and acidophilic adaptation. Bioresour Technol, 2009, 100(24):6465-6471.
[11] Zhang W M, Lei X G. Cumulative improvements of thermostability and pH-activity profile of Aspergillus niger PhyA phytase by site-directed mutagenesis. Appl Microbiol Biotechnol, 2008, 77(5):1033-1040.
[12] Ogola H J, Hashimoto N, Miyabe S, et al. Enhancement of hydrogen peroxide stability of a novel Anabaena sp. DyP-type peroxidase by site-directed mutagenesis of methionine residues. Appl Microbiol Biotechnol, 2010, 87(5):1727-1736.
[13] Li Y F, Hu F J, Wang X M, et al. A rational design for trypsin-resistant improvement of Armillariella tabescens β-mannanase MAN47 based on molecular structure evaluation. J Biotechnol, 2013, 163(4):401-407.
[14] 胡凤娟, 王旭曼, 刘大岭, 等. 具蛋白酶抗性的Armillariella tabescens β-甘露聚糖酶MAN47的分子定向改造. 中国生物工程杂志, 2011, 31(10):75-82. Hu F J, Wang X M, Liu D L, et al. Directional molecular rebuilding of β-mannanase MAN47 with trypsin-resistance from Armillariella tabescens. China Biotechnology, 2011, 31(10):75-82.
[15] Huber R, Bode W. Structural basis of the activation and action of trypsin. Acc Chem Res, 1978, 11(3):114-122.
[16] 夏涵, 府伟灵, 陈鸣, 等. 快速提取细菌DNA方法的研究. 现代预防医学, 2005, 32(5):571-573. Xia H, Fu W L, Chen M, et al. The research of rapid DNA extraction from bacteria. Modern Preventive Medicine, 2005, 32(5):571-573.
[17] 徐芳, 姚泉洪, 熊爱生, 等. 重叠延伸PCR技术及其在基因工程上的应用. 分子植物育种, 2006, 4(5):747-750. Xu F, Yao Q H, Xiong A S, et al. SOE PCR and its application in genetic engineering. Molecular Plant Breeding, 2006, 4(5):747-750.
[18] Miller G L. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem, 1959, 31(3):426-428.

[1] ZHOU Hui-ying,ZHOU Cui-xia,ZHANG Ting,WANG Xue-yu,ZHANG Hui-tu,JI Yi-zhi,LU Fu-ping. Enhancing the Expression of the Substrate by the Extracellular Secreted Enzymes and Improving the Alkaline Protease Production in Bacillus licheniformis[J]. China Biotechnology, 2021, 41(2/3): 53-62.
[2] WEI Zi-xiang,ZHANG Liu-qun,LEI Lei,HAN Zheng-gang,YANG Jiang-ke. Improving the Activity and Thermal Stability of Thermomyces lanuginosus Lipase by Rational Design[J]. China Biotechnology, 2021, 41(2/3): 63-69.
[3] SU Yong-jun,HU Die,HU Bo-chun,LI Chuang,WEN Zheng,ZHANG Chen,WU Min-chen. Improving the Enantioselectivity of an Epoxide Hydrolase towards p-Methylphenyl Glycidyl Ether by Site-directed Mutagenesis[J]. China Biotechnology, 2020, 40(3): 88-95.
[4] LI Bing-juan,LIU Jin-ding,LIAO Yi-fang,HAN Wen-ying,LIU Ke,HOU Chen-lu,ZHANG Lei. Advances in Protein Engineering of the Old Yellow Enzyme OYE Family[J]. China Biotechnology, 2020, 40(3): 163-169.
[5] Ji-ping LI,Chang-jie BAO,Guang CHEN,Si-tong ZHANG. Research Advances in Heterologous Expression of Xylanase[J]. China Biotechnology, 2019, 39(7): 91-99.
[6] Yin YAO,Qi MIN,Hai-rong XIONG,Li ZHANG. Co-expression of xylanase and mannanase in Pichia pastoris and the enzymatic analyses[J]. China Biotechnology, 2019, 39(3): 37-45.
[7] YANG Qing, WANG Bin, WANG Ya-wei, ZHANG Hua-shan, XIONG Hai-rong, ZHANG Li. Comparison of Signal Peptides for Two Hemicellulase Secretory Expression[J]. China Biotechnology, 2017, 37(8): 15-22.
[8] Cun-duo TANG,Hong-ling SHI,Zhu-jin JIAO,Fei LIU,Jian-he XU,Yun-chao KAN,Lun-guang YAO. Effect of Prolines in the Loop of CPC Acylase Substrate Binding Region on Its Catalytic Properties[J]. China Biotechnology, 2017, 37(12): 34-39.
[9] GUO Chao, WANG Zhi-yan, GAN Yi-ru, LI Dan, DENG Yong, YU Hao-ran, HUANG He. Engineering Thermostability of Bovine Enterokinase by Rational Design Method[J]. China Biotechnology, 2016, 36(8): 46-54.
[10] WU Qin, HU Die, LI Xue-qing, YUAN Feng-jiao, LI Jian-fang, WU Min-chen. Site-directed Mutagenesis of Y13F to Improve the Thermotolerance of Mesophilic Xylanase from Aspergillus oryzae[J]. China Biotechnology, 2016, 36(12): 36-41.
[11] MA Chen-lu, TANG Cun-duo, SHI Hong-ling, WANG Rui, YUE Chao, XIA Min, WU Min-chen, KAN Yun-chao. Semi-rational Modification of Cephalosporin C Acylase and Biosynthesis of 7-ACA[J]. China Biotechnology, 2015, 35(12): 65-71.
[12] LI Si-jia, WANG Ya-wei, FU Zheng, WANG Wen-jun, Ossi Turunen, XIONG Hai-rong. Expression of Thermomyces lanuginosus Xylanase 1YNA and Its Disulphide Bridge Mutant in Pichia Pastoris[J]. China Biotechnology, 2013, 33(3): 74-79.
[13] HE Jie, SU Ling-qia, WU Jing. Optimization of Fermentation in Shake Flasks for the Xylanase in Recombinant E. coli[J]. China Biotechnology, 2013, 33(2): 41-46.
[14] MA Ming-zhang, HOU Chun-xiao, WANG Qian, ZHANG Chuan-liang, LIU Jian-xin, WENG Xiao-yan. Current Progress on Endoxylanase Inhibitors in Cereals[J]. China Biotechnology, 2011, 31(04): 129-133.
[15] MO Gong-Gui, WU Zhen-Jun, CA Heng, TUN Qi-Ci, DAN Nan. Recent Progress on the Production of Xylanase by Microbial Fermentation[J]. China Biotechnology, 2010, 30(02): 138-141.