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中国生物工程杂志

China Biotechnology
China Biotechnology  2020, Vol. 40 Issue (8): 19-23    DOI: 10.13523/j.cb.2005033
    
Single-Primer PCR for Site-Directed Mutagenesis
PENG Xiang-lei,WANG Ye,WANG Li-nan,SU Yan-bin,FU Yuan-hui,ZHENG Yan-peng,HE Jin-sheng()
College of Life Sciences & Bioengineering, Beijing Jiaotong University, Beijing 100044, China
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Abstract  

Objectives: To introduce site-directed mutagenesis into the pcDNA3.1(+)-F plasmid containing respiratory syncytial virus F gene coding sequence by single circular PCR using single primer. Methods: First, three single-stranded primers with mutagenesis N70Q, I431N or Q270T were designed according to the template pcDNA3.1(+)-F plasmid, respectively. Second, once-single PCR with the double-stranded DNA template and each of the three single primers was performed. Next, the PCR products were treated with endonuclease Dpn I to eliminate the methylated template DNA and then transformed into E. coli DH5α. Finally, plasmids were extracted from the culture of the selected positive clones and sent for sequencing after digestion identification. Results: The results of enzymatic digestion and sequencing analysis were as expected. Three types of site-directed mutagenesis were successfully introduced, namely ‘_X_’, ‘X_X’, ‘XXX’ when ‘X’ means mutated nucleotide and ‘_’ means the opposite. Conclusions: Single-primer PCR is a simple, quick and effective innovation to introduce site-directed mutagenesis, which solved the problems of multiple PCRs, complicated procedures and low effectiveness in previous methods.



Key wordsSite-directed mutation      Single primer      PCR      Gene engineering     
Received: 17 May 2020      Published: 10 September 2020
ZTFLH:  Q291  
Corresponding Authors: Jin-sheng HE     E-mail: jshhe@bjtu.edu.cn
Cite this article:

PENG Xiang-lei,WANG Ye,WANG Li-nan,SU Yan-bin,FU Yuan-hui,ZHENG Yan-peng,HE Jin-sheng. Single-Primer PCR for Site-Directed Mutagenesis. China Biotechnology, 2020, 40(8): 19-23.

URL:

https://manu60.magtech.com.cn/biotech/10.13523/j.cb.2005033     OR     https://manu60.magtech.com.cn/biotech/Y2020/V40/I8/19

引物名称 引物序列(加粗字体处为引入的突变碱基)
N70Q 5'-CATCAAGAAAATCAAGTGCCAGGGCACCGACGCCAAG-3'
I431N 5'-GAACCGGGGCATCAACAAGACCTTCAGCAAC-3'
Q270T 5'-GCCCATCACCAACGACACCAAAAAGCTGATGAGCAACAAC-3'
Table 1 Primers for site-directed mutagenesis on RSV F gene
成分名称 用量
模板pcDNA3.1(+)-F 50ng
引物 125ng
10mmol/L dNTPs 1μl
5×Q5反应缓冲液 10μl
Q5高保真DNA聚合酶 0.5μl(1U)
无核酸酶水 补齐至50μl
Table 2 PCR system components
步骤 温度 时间
预变性 98℃ 30s
15~20循环 98℃ 10s
72℃ 4min
终延伸 72℃ 5min
保持 4℃ forever
Table 3 PCR cycling conditions
Fig.1 Schematic diagram of once single-primer PCR method for site-directed mutagenesis
Fig.2 Enzymatic digestion results of the three site-directed mutagenesis on RSV F gene: N70Q, I431N and Q270T
Fig.3 Sequencing results of three successful site-directed mutagenesis(The mutated sites are shown in red borders) (a) N70Q (b) I431N (c) Q270T
[1]   Zeng F L, Zhang S H, Hao Z M, et al. Efficient strategy for introducing large and multiple changes in plasmid DNA. Scientific Reports, 2018,8(1):1714.
doi: 10.1038/s41598-018-20169-8 pmid: 29379085
[2]   Liu H, Naismith J H. An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol. BMC Biotechnology, 2008,8:91.
doi: 10.1186/1472-6750-8-91 pmid: 19055817
[3]   Edelheit O, Hanukoglu A, Hanukoglu I. Simple and efficient site-directed mutagenesis using two single-primer reactions in parallel to generate mutants for protein structure-function studies. BMC Biotechnology, 2009,9:61.
doi: 10.1186/1472-6750-9-61 pmid: 19566935
[4]   张敏, 辛绍杰, 段学章, 等. 单引物二次PCR法对重组质粒中HBV前C-C基因进行点突变的研究. 中华检验医学杂志, 2007,30(4):444-446.
[4]   Zhang M, Xin S J, Duan X Z, et al. Establishment of a new “twice single primer PCR method” and application for site-directed mutation in HBV pre-core region. Chin J Lab Med, 2007,30(4):444-446.
[5]   高瑞平, 程隆斌, 李振秋. 一种简便快速的单引物PCR定点突变方法. 中国生物工程杂志, 2015,35(5):61-65.
doi: 10.13523/j.cb.20150509
[5]   Gao R P, Cheng L B, Li Z Q. A simple and rapid single primer PCR method for site-directed mutagenesis. China Biotechnology, 2015,35(5):61-65.
doi: 10.13523/j.cb.20150509
[6]   Zhuo J, Ma B, Xu J, et al. Reconstruction of a hybrid nucleoside antibiotic gene cluster based on scarless modification of large DNA fragments. Sci China Life Sci, 2017,60:968-979.
doi: 10.1007/s11427-017-9119-1 pmid: 28840532
[7]   Zeng F L, Zang J P, Zhang S H, et al. AFEAP cloning: a precise and efficient method for large DNA sequence assembly. BMC Biotechnology, 2017,17(1):81.
doi: 10.1186/s12896-017-0394-x pmid: 29137618
[8]   Zou X H, Bi Z X, Guo X J, et al. DNA assembly technique simplifies the construction of infectious clone of fowl adenovirus.. J Virol Methods 2018,257:85-92.
doi: 10.1016/j.jviromet.2018.04.001 pmid: 29703616
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