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Recent Advances in Butanol Biosynthesis of Escherichia coli |
YAN Wei-huan1,2,HUANG Tong1,2,HONG Jie-fang1,MA Yuan-yuan1,3,4,5,**() |
1 Tianjin R&D Center for Petrochemical Technology, Tianjin University, Tianjin 300072, China 2 Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China 3 Key Laboratory for Green Chemical Technology of Ministry of Education, Tianjin University, Tianjin 300072, China 4 State Key Laboratory of Engines, Tianjin University, Tianjin 300072, China 5 State Key Laboratory of Biobased Material and Green Papermaking,Qilu University of Technology, Shandong Academy of Sciences, Jinan 250353, China |
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Abstract Biobutanol has recently attracted considerable attentions as an important commodity chemical and alternative for petroleum-based fuels. Engineered butanol synthesis pathway has been introduced into E.coli, which is an excellent chassis strain for biosynthetic chemicals. However, the produce of butanol has often been limited by the problems as follows: (1) Non-optimal metabolic flux; (2) Imbalanced CoA and reducing power; (3) Low butanol yields and titer and other issues. Herein, recent advances in butanol biosynthesis of E.coli are summarized and prospected, including screening for high-efficient enzymes, optimization of carbon flux towards butanol, adjusting cofactor supply and optimization of fermentation strategies, which would provide a theoretical basis for high-efficient production of butanol.
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Received: 22 April 2020
Published: 12 October 2020
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Corresponding Authors:
Yuan-yuan MA
E-mail: myy@tju.edu.cn
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|
[1] |
Saini M, Hong Chen M, Chiang C J, et al. Potential production platform of n-butanol in Escherichia coli. Metabolic Engineering, 2015,27:76-82.
pmid: 25461833
|
|
|
[2] |
Dürre P. Fermentative production of butanol-the academic perspective. Current Opinion in Biotechnology, 2011,22(3):331-336.
pmid: 21565485
|
|
|
[3] |
Mussatto S I, Dragone G, Guimarães P M R, et al. Technological trends, global market, and challenges of bio-ethanol production . Biotechnology Advances, 2010,28(6):817-830.
pmid: 20630488
|
|
|
[4] |
Formanek J, Mackie R, Blaschek H P. Enhanced Butanol Production by Clostridium beijerinckii BA101 grown in semidefined P2 medium containing 6 percent maltodextrin or glucose. Applied & Environmental Microbiology, 1997,63(6):2306-2310.
doi: 10.1128/AEM.63.6.2306-2310.1997
pmid: 16535628
|
|
|
[5] |
Jang Y S, Lee S Y. Recent advances in biobutanol production. Industrial Biotechnology, 2015,11(6):316-321.
|
|
|
[6] |
Dong H, Zhao C, Zhang T, et al. Bioreactor engineering research and industrial applications I. Berlin: Springer Berlin Heidelberg, 2015: 155:141-163.
|
|
|
[7] |
Jeong H, Lee S W, Kim S H, et al. Global functional analysis of butanol-sensitive Escherichia coli and its evolved butanol-tolerant strain. J Microbiol Biotechnology, 2017,27(6):1171-1179.
|
|
|
[8] |
Atsumi S, Cann A F, Connor M R, et al. Metabolic engineering of Escherichia coli for 1-butanol production. Metabolic Engineering, 2008,10(6):305-311.
|
|
|
[9] |
Inui M, Suda M, Kimura S, et al. Expression of Clostridium acetobutylicum butanol synthetic genes in Escherichia coli. Applied Microbiology and Biotechnology, 2008,77(6):1305-1316.
pmid: 18060402
|
|
|
[10] |
Atsumi S, Hanai T, Liao J C. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature, 2008,451(7174):86-89.
|
|
|
[11] |
Shen C R, Liao J C. Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways. Metabolic Engineering, 2008,10(6):312-320.
pmid: 18775501
|
|
|
[12] |
Dellomonaco C, Clomburg J M, Miller E N, et al. Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals. Nature, 2011,476(7360):355-359.
pmid: 21832992
|
|
|
[13] |
Ferreira S, Pereira R, Liu F, et al. Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate. Biotechnology for Biofuels, 2019,12(1):230.
|
|
|
[14] |
姜岷, 张秋妍, 郭亭, 等. 产丁醇基因工程菌的构建、菌株及其应用: 中国,CN201210067927.8. 2012-08-01[2020-04-22]. https://kns.cnki.net/kcms/detail/detail.aspx?dbcode=SCPD&dbname=SCPD2012&filename=CN102618569A&v=MzE1MTUwQzVoNkRRNU56eGNWN1RkNlRRN2ozUkphZTdLV1JicVdadU51RXl6c1ViMD1KaU82SHJHK0g5bkpxWVk=.
|
|
|
[14] |
Jiang M, Zhang Q Y, Guo T, et al. Construction, strain and application of genetic engineered butanol producing strain: China,CN201210067927.8. 2012-08-01[2020-04-22]. https://kns.cnki.net/kcms/detail/detail.aspx?dbcode=SCPD&dbname=SCPD2012&filename=CN102618569A&v=MzE1MTUwQzVoNkRRNU56eGNWN1RkNlRRN2ozUkphZTdLV1JicVdadU51RXl6c1ViMD1KaU82SHJHK0g5bkpxWVk=
|
|
|
[15] |
Bond-Watts , B.B. , Chang , et al. Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways. Nature Chemical Biology, 2011,7(4):222-227.
doi: 10.1038/nchembio.537
pmid: 21358636
|
|
|
[16] |
Chang Michelle C Y, Bond-Watts B, Wen M, et al. Synthetic pathways for biofuel synthesis: United States,US201213708824. 2014-01-02[2020-04-22] https://xueshu.baidu.com/usercenter/paper/show?paperid=e82b88cc61a899e35eed97bed59d470f&site=xueshu_se&hitarticle=1.
|
|
|
[17] |
Shen C R, Lan E I, Dekishima Y, et al. Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli. Appl. Environ. Microbiol., 2011,77(9):2905-2915.
|
|
|
[18] |
Ohtake T, Pontrelli S, Laviña W A, et al. Metabolomics-driven approach to solving a CoA imbalance for improved 1-butanol production in Escherichia coli . Metabolic Engineering, 2017,41:135-143.
|
|
|
[19] |
Kataoka N, Vangnai A S, Pongtharangkul T, et al. Construction of CoA-dependent 1-butanol synthetic pathway functions under aerobic conditions in Escherichia coli. Journal of Biotechnology, 2015,204:25-32.
pmid: 25865277
|
|
|
[20] |
Dong H, Zhao C, Zhang T, et al. A systematically chromosomally engineered Escherichia coli efficiently produces butanol. Metabolic Engineering, 2017,44:284-292.
pmid: 29102594
|
|
|
[21] |
姜岷, 张秋妍, 欧阳平凯, 等. 一种构建高产丁醇菌株的方法与应用: 中国,CN201510924308.X. 2016-03-02[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[21] |
Jiang M, Zhang Q Y, Ou Yang P K, et al. A method of constructing high-butanol-producing strain and its application. China,CN201510924308.X. 2016-03-02[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[22] |
董红军, 赵春华, 张延平, 等. 一种提高大肠杆菌生产丁醇的方法: 中国,CN201610035150.5. 2016-04-20[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[22] |
Dong H J, Zhao C H, Zhang Y P, et al. A method for improving the production of butanol by Escherichia coli. China, CN201610035150.5. 2016-04-20[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[23] |
董红军, 赵春华, 张延平, 等. 一种丁酸产量低且丁醇产量高的工程菌及其构建方法与应用: 中国,CN201610034891.1. 2016-05-11[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[23] |
Dong H J, Zhao C H, Zhang Y P, et al. Construction of engineering bacteria with low butyric acid output and high butanol output and its application. China, CN201610034891.1. 2016-05-11[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[24] |
董红军, 赵春华, 李寅, 等. 高产丁醇的大肠杆菌基因工程菌及其构建方法与应用: 中国, CN201610204922.3. 2017-10-24[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[24] |
Dong H J, Zhao C H, Li Y, et al. A method of constructing high-butanol-producing engineered Escherichia coli strain and its application. China, CN201610204922.3. 2017-10-24[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[25] |
Holland-Staley C A, Lee K S, Clark D P, et al. Aerobic activity of Escherichia coli alcohol dehydrogenase is determined by a single amino acid. Journal of BACTERiology, 2000,182(21):6049-6054.
|
|
|
[26] |
Heo M J, Jung H M, Um J, et al. Controlling citrate synthase expression by CRISPR/Cas9 genome editing for n-butanol production in Escherichia coli. ACS Synthetic Biology, 2017,6(2):182-189.
pmid: 27700055
|
|
|
[27] |
Gulevich A Y, Skorokhodova A Y, Sukhozhenko A V, et al. Metabolic engineering of Escherichia coli for 1-butanol biosynthesis through the inverted aerobic fatty acid β-oxidation pathway. Biotechnology Letters. 2012,34(3):463-469.
|
|
|
[28] |
Dong H, Zhao C, Zhang T, et al. Engineering Escherichia coli cell factories for n-butanol production//Bioreactor Engineering Research and Industrial Applications I. Berlin:Springer Berlin Heidelberg, 2015: 141-163.
|
|
|
[29] |
Kim S K, Seong W, Han G H, et al. CRISPR interference-guided multiplex repression of endogenous competing pathway genes for redirecting metabolic flux in Escherichia coli. Microbial Cell Factories, 2017,16(1):188.
doi: 10.1186/s12934-017-0802-x
pmid: 29100516
|
|
|
[30] |
Nitta K, Laviña W A, Pontrelli S, et al. Metabolome analysis revealed the knockout of glyoxylate shunt as an effective strategy for improvement of 1-butanol production in transgenic Escherichia coli. Journal of Bioscience and Bioengineering, 2019,127(3):301-308.
doi: 10.1016/j.jbiosc.2018.08.013
pmid: 30482596
|
|
|
[31] |
Maharjan R P, Yu P L, Seeto S, et al. The role of isocitrate lyase and the glyoxylate cycle in Escherichia coli growing under glucose limitation. Research in Microbiology, Elsevier, 2005,156(2):178-183.
|
|
|
[32] |
Wang Q, Liu L, Shi J, et al. Engineering Escherichia coli for autoinducible production of n-butanol. Electronic Journal of Biotechnology, 2015,18(2):138-142.
|
|
|
[33] |
秦义, 董志姚, 刘立明, 等. 工业微生物中NADH的代谢调控. 生物工程学报, 2009,25(2):161-169.
|
|
|
[33] |
Qin Y, Dong Z T, Liu L M, et al. Manipulation of NADH metabolism in industrial strains. Chinese Journal of Biotechnology, 2009,25(2):161-169.
|
|
|
[34] |
Pontrelli S, Chiu T Y, Lan E I, et al. Escherichia coli as a host for metabolic engineering. Metabolic Engineering, 2018,50:16-46.
doi: 10.1016/j.ymben.2018.04.008
pmid: 29689382
|
|
|
[35] |
Lim J H, Seo S W, Kim S Y, et al. Model-driven rebalancing of the intracellular redox state for optimization of a heterologous n-butanol pathway in Escherichia coli. Metabolic Engineering, 2013,20:56-62.
|
|
|
[36] |
Wilkinson K D, Williams C H. NADH inhibition and NAD activation of Escherichia coli lipoamide Dehydrogenase Catalyzing the NADH-Lipoamide Reaction. Journal of Biological Chemistry, 1981,256(5):2307-2314.
pmid: 7007381
|
|
|
[37] |
Kim Y, Ingram L O, Shanmugam K T. Dihydrolipoamide dehydrogenase mutation alters the NADH sensitivity of pyruvate dehydrogenase complex of Escherichia coli K-12. Journal of Bacteriology, 2008,190(11):3851-3858.
pmid: 18375566
|
|
|
[38] |
Saini M, Li S Y, Wang Z W, et al. Systematic engineering of the central metabolism in Escherichia coli for effective production of n-butanol. Biotechnology for Biofuels, 2016,9(1):69-78.
doi: 10.1186/s13068-016-0467-4
|
|
|
[39] |
赵云鹏, 赛尼·莫卡西, 姜中人. 可生产正丁醇的菌株及其应用: 中国, CN201510531354.3. 2015-11-18[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[39] |
Zhao Y P, Mocassi S, Jiang Z R, et al. A butanol-production strain and its application. China, CN201510531354.3. 2015-11-18[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[40] |
Wen R C, Shen C R. Self-regulated 1-butanol production in Escherichia coli based on the endogenous fermentative control. Biotechnology for Biofuels, 2016,9(1):267.
doi: 10.1186/s13068-016-0680-1
|
|
|
[41] |
赵云鹏. 分别可生产丁酸和正丁醇的菌株及生成正丁醇的方法: 中国, CN201410050883.7. 2015-07-22[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[41] |
Zhao Y P. A butanol-production and butyric acid-production strain and method for producing n-butanol. China, CN201410050883.7. 2015-07-22[2020-04-22]. https://kns.cnki.net/kns/brief/default_result.aspx.
|
|
|
[42] |
王庆龙, 刘莉, 史吉平, 等. 丁醇基因在大肠杆菌中表达的现状与展望. 中国生物工程杂志, 2014,34(6):90-97.
doi: 10.13523/j.cb.20140613
|
|
|
[42] |
Wang Q L, Liu L, Shi J P, et al. Current status and prospects of the expression of butanol pathway in Escherichia coli. China Biotechnology, 2014,34(6):90-97.
doi: 10.13523/j.cb.20140613
|
|
|
[43] |
贺雪婷, 张敏华, 洪解放, 等. 大肠杆菌丁醇耐受机制及耐受菌选育研究进展. 中国生物工程杂志, 2018,38(9):81-87.
|
|
|
[43] |
He X T, Zhang M H, Hong J F, et al. Research progress on butanol-tolerant strain and tolerance mechanism of Escherichia coli. China Biotechnology, 2018,38(9):81-87.
|
|
|
[44] |
Chin W C, Lin K H, Liu C C, et al. Improved n-butanol production via co-expression of membrane-targeted tilapia metallothionein and the clostridial metabolic pathway in Escherichia coli. BMC Biotechnology, 2017,17(1):36.
doi: 10.1186/s12896-017-0356-3
pmid: 28399854
|
|
|
[45] |
Zhao C, Sinumvayo J P, Zhang Y, et al. Design and development of a “Y-shaped” microbial consortium capable of simultaneously utilizing biomass sugars for efficient production of butanol. Metabolic Engineering, 2019,55:111-119.
pmid: 31251983
|
|
|
[46] |
马泽林, 刘家亨, 黄序, 等. 微生物利用木质纤维素的研究进展. 中国生物工程杂志, 2017,37(6):124-133.
|
|
|
[46] |
Ma Z L, Liu J H, Huang X, et al. Research progress on utilization of lignocellulosic biomass by microorganisms. China Biotechnology, 2017,37(6):124-133.
|
|
|
[47] |
卞化, 孙新晓, 袁其朋, 等. 代谢工程改造异养微生物固定CO2研究进展. 生物工程学报, 2019,35(2):195-203.
doi: 10.13345/j.cjb.180267
pmid: 30806049
|
|
|
[47] |
Bian H, Sun X X, Yuan Q P, et al. Advances in metabolic engineering of heterotrophic microorganisms for CO2 fixation: a review. Chinese Journal of Biotechnology, 2019,35(2):195-203.
doi: 10.13345/j.cjb.180267
pmid: 30806049
|
|
|
[48] |
Antonovsky N, Gleizer S, Noor E, et al. Sugar synthesis from CO2 in Escherichia coli. Cell, 2016,166(1):115-125.
pmid: 27345370
|
|
|
[49] |
Gleizer S, Ben-Nissan R, Bar-On Y M, et al. Conversion of Escherichia coli to generate all biomass carbon from CO2. Cell, 2019,179(6):1255-1263.
pmid: 31778652
|
|
|
[50] |
Choi K R, Jang W D, Yang D, et al. Systems metabolic engineering strategies: integrating systems and synthetic biology with metabolic engineering. Trends in Biotechnology, 2019,37(8):817-837.
pmid: 30737009
|
|
|
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