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产电微生物基因调控网络的构建和特异性通路分析 |
徐军, 刘翠翠, 丁德武, 孙啸, 谢建明 |
东南大学生物电子学国家重点实验室 生物科学与医学工程学院 南京 210096 |
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Reconstruction and Analysis of the Gene Regulatory Networks of Shewanella onedensis MR-1 |
XU Jun, LIU Cui-cui, DING De-wu, SUN Xiao, XIE Jian-ming |
State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Nanjing 210096, China |
引用本文:
徐军, 刘翠翠, 丁德武, 孙啸, 谢建明. 产电微生物基因调控网络的构建和特异性通路分析[J]. 中国生物工程杂志, 2014, 34(11): 42-46.
XU Jun, LIU Cui-cui, DING De-wu, SUN Xiao, XIE Jian-ming. Reconstruction and Analysis of the Gene Regulatory Networks of Shewanella onedensis MR-1. China Biotechnology, 2014, 34(11): 42-46.
链接本文:
https://manu60.magtech.com.cn/biotech/CN/10.13523/j.cb.20141106
或
https://manu60.magtech.com.cn/biotech/CN/Y2014/V34/I11/42
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[1] Reddy L V,Kumar S P,Wee Y J.Microbial Fuel Cells(MFCs)-a novel source of energy for new millennium. Current Research Technology and Education Topics in Applied Microbiology and Microbial Biotechnology, 2010, 2(13): 956-964.
[2] Lovely D R,Holmes D E,Nevin K P. Dissimilatory fe(iii)and mn(iv)reduction.Advances in Microbial Physiology, 2004,49:219-286.
[3] Logan B E,Regan J M.Electricity-producing bacterial communities in microbial fuel cells.Trends in Microbiology, 2006,14(12):512-518.
[4] Coursolle D,Baron D B, Bond D R, et al.The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensis.Journal of Bacteriology,2009.192(2):467-474.
[5] Coursolle D, Gralnick J A. Reconstruction of extracellular respiratory pathways for iron(III) reduction in Shewanella oneidensis strain MR-1. Front Microbiol,2012,21(3):56.
[6] Yu H, Luscombe N, Lu H, et al. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. Genome Res, 2004,14(6):1107-1118.
[7] Meyer T E,Tsapin A I,Vandenberghe I,et al.Identification of 42 possible cytochrome c genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes.OMICS: A Journal of Integrative Biology, 2004, 8(1): 57-77.
[8] Ding D W, Xu J, Li L,et al. Idenifying the potential extracellualr electron transfer pathways from a c-type cytochrome network.Molecular BioSystems,2014,10(12):3138-3146.
[9] Mao F, Dam P, Chou J, et al. DOOR: a database for prokaryotic operons. Nucleic Acids Res, 2009,37(suppl 1):D459-D463.
[10] Parkinson H, Sarkans U, Kolesnikov N, et al. ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Research, 2011 ,39(Database issue):D1002-D1004.
[11] Yang Y, Harris D P, Luo F, et al. Snapshot of iron response in Shewanella oneidensis by gene network reconstruction. BMC Genomics, 2009, 10(1): 131.
[12] Beg Q K, Zampieri M, Klitgord N, et al. Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.Nucleic Acids Research, 2012, 40(15): 7132-7149.
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