综述 |
|
|
|
|
重组蛋白质在大肠杆菌体系中的可溶性表达策略* |
苗朝悦,杜乐,王佳琦,陈梓杰,黄靖倍,陈且昕,邹沛璇,韩笑,张纯**() |
四川大学华西药学院 靶向药物及释药系统教育部重点实验室 成都 610041 |
|
Soluble Expression Strategies for Production of Recombinant Proteins in Escherichia coli |
MIAO Zhao-yue,DU Le,WANG Jia-qi,CHEN Zi-jie,HUANG Jing-bei,CHEN Qie-xin,ZOU Pei-xuan,HAN Xiao,ZHANG Chun**() |
Key Laboratory of Drug Targeting and Drug Delivery System of Ministry of Education, West China School of Pharmacy, Sichuan University, Chengdu 610041, China |
引用本文:
苗朝悦, 杜乐, 王佳琦, 陈梓杰, 黄靖倍, 陈且昕, 邹沛璇, 韩笑, 张纯. 重组蛋白质在大肠杆菌体系中的可溶性表达策略*[J]. 中国生物工程杂志, 2023, 43(9): 33-45.
MIAO Zhao-yue, DU Le, WANG Jia-qi, CHEN Zi-jie, HUANG Jing-bei, CHEN Qie-xin, ZOU Pei-xuan, HAN Xiao, ZHANG Chun. Soluble Expression Strategies for Production of Recombinant Proteins in Escherichia coli. China Biotechnology, 2023, 43(9): 33-45.
链接本文:
https://manu60.magtech.com.cn/biotech/CN/10.13523/j.cb.2305048
或
https://manu60.magtech.com.cn/biotech/CN/Y2023/V43/I9/33
|
[1] |
Villaverde A, Carrió M M. Protein aggregation in recombinant bacteria: biological role of inclusion bodies. Biotechnology Letters, 2003, 25(17): 1385-1395.
doi: 10.1023/a:1025024104862
pmid: 14514038
|
[2] |
Hannig G, Makrides S C. Strategies for optimizing heterologous protein expression in Escherichia coli. Trends in Biotechnology, 1998, 16(2): 54-60.
doi: 10.1016/s0167-7799(97)01155-4
pmid: 9487731
|
[3] |
Bhatwa A, Wang W J, Hassan Y I, et al. Challenges associated with the formation of recombinant protein inclusion bodies in Escherichia coli and strategies to address them for industrial applications. Frontiers in Bioengineering and Biotechnology, 2021, 9: 630551.
doi: 10.3389/fbioe.2021.630551
|
[4] |
Oberg K, Chrunyk B A, Wetzel R, et al. Native-like secondary structure in interleukin-1 beta inclusion bodies by attenuated total reflectance FTIR. Biochemistry, 1994, 33(9): 2628-2634.
pmid: 8117725
|
[5] |
Netzer W J, Hartl F U. Recombination of protein domains facilitated by co-translational folding in eukaryotes. Nature, 1997, 388(6640): 343-349.
doi: 10.1038/41024
|
[6] |
Canaves J M, Page R, Wilson I A, et al. Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy for structural genomics. Journal of Molecular Biology, 2004, 344(4): 977-991.
pmid: 15544807
|
[7] |
Goh C S, Lan N, Douglas S M, et al. Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis. Journal of Molecular Biology, 2004, 336(1): 115-130.
doi: 10.1016/j.jmb.2003.11.053
|
[8] |
Consortium S G, Consortium C S G, Consortium N S G, et al. Protein production and purification. Nature Methods, 2008, 5(2): 135-146.
doi: 10.1038/nmeth.f.202
pmid: 18235434
|
[9] |
Schlieker C, Bukau B, Mogk A. Prevention and reversion of protein aggregation by molecular chaperones in the E. coli cytosol: implications for their applicability in biotechnology. Journal of Biotechnology, 2002, 96(1): 13-21.
doi: 10.1016/S0168-1656(02)00033-0
|
[10] |
Zhang G, Ignatova Z. Folding at the birth of the nascent chain: coordinating translation with co-translational folding. Current Opinion in Structural Biology, 2011, 21(1): 25-31.
doi: 10.1016/j.sbi.2010.10.008
pmid: 21111607
|
[11] |
Lu J L, Deutsch C. Folding zones inside the ribosomal exit tunnel. Nature Structural & Molecular Biology, 2005, 12(12): 1123-1129.
doi: 10.1038/nsmb1021
|
[12] |
Wittrup K D. Disulfide bond formation and eukaryotic secretory productivity. Current Opinion in Biotechnology, 1995, 6(2): 203-208.
pmid: 7734749
|
[13] |
Sharp P M, Cowe E, Higgins D G, et al. Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Research, 1988, 16(17): 8207-8211.
pmid: 3138659
|
[14] |
Chen H Q, Xu Z N, Xu N Z, et al. High-level expression of human β-defensin-2 gene with rare codons in E. coli cell-free system. Protein & Peptide Letters, 2006, 13(2): 155-161.
|
[15] |
Cruz-Vera L R, Magos-Castro M A, Zamora-Romo E, et al. Ribosome stalling and peptidyl-tRNA drop-off during translational delay at AGA codons. Nucleic Acids Research, 2004, 32(15): 4462-4468.
pmid: 15317870
|
[16] |
Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. Journal of Molecular Biology, 1981, 146(1): 1-21.
pmid: 6167728
|
[17] |
Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. Journal of Molecular Biology, 1981, 151(3): 389-409.
doi: 10.1016/0022-2836(81)90003-6
pmid: 6175758
|
[18] |
Angov E, Hillier C J, Kincaid R L, et al. Heterologous protein expression is enhanced by harmonizing the codon usage frequencies of the target gene with those of the expression host. PLoS One, 2008, 3(5): e2189.
|
[19] |
Rehbein P, Berz J, Kreisel P, et al. “CodonWizard”-An intuitive software tool with graphical user interface for customizable codon optimization in protein expression efforts. Protein Expression and Purification, 2019, 160: 84-93.
doi: S1046-5928(19)30121-4
pmid: 30953700
|
[20] |
Puigbò P, Guzmán E, Romeu A, et al. OPTIMIZER: a web server for optimizing the codon usage of DNA sequences. Nucleic Acids Research, 2007, 35(suppl_2): W126-W131.
doi: 10.1093/nar/gkm219
|
[21] |
Rong Y X, Jensen S I, Lindorff-Larsen K, et al. Folding of heterologous proteins in bacterial cell factories: cellular mechanisms and engineering strategies. Biotechnology Advances, 2023, 63: 108079.
doi: 10.1016/j.biotechadv.2022.108079
|
[22] |
Gayathri R, Sheetal B, Chaudhuri Tapan K. Multimodal approaches for the improvement of the cellular folding of a recombinant iron regulatory protein in E. coli. Microbial Cell Factories, 2022, 21(1): 20.
doi: 10.1186/s12934-022-01749-w
|
[23] |
Kiefhaber T, Rudolph R, Kohler H H, et al. Protein aggregation in vitro and in vivo: a quantitative model of the kinetic competition between folding and aggregation. Bio/Technology, 1991, 9(9): 825-829.
|
[24] |
Restrepo-Pineda S, Sánchez-Puig N, Pérez N O, et al. The pre-induction temperature affects recombinant HuGM-CSF aggregation in thermoinducible Escherichia coli. Applied Microbiology and Biotechnology, 2022, 106(8): 2883-2902.
doi: 10.1007/s00253-022-11908-z
|
[25] |
Chou C P. Engineering cell physiology to enhance recombinant protein production in Escherichia coli. Applied Microbiology and Biotechnology, 2007, 76(3): 521-532.
doi: 10.1007/s00253-007-1039-0
|
[26] |
Sahdev S, Khattar S K, Saini K S. Production of active eukaryotic proteins through bacterial expression systems: a review of the existing biotechnology strategies. Molecular and Cellular Biochemistry, 2008, 307(1): 249-264.
doi: 10.1007/s11010-007-9603-6
|
[27] |
田顺立, 郑春阳. 重组角质细胞生长因子(KGF)的原核表达及优化. 安徽农业科学, 2018, 46(33): 71-74.
|
|
Tian S L, Zheng C Y. Expression and optimization of recombinant keratinocyte growth factor(KGF) in E. coli. Journal of Anhui Agricultural Sciences, 2018, 46(33): 71-74.
|
[28] |
Jonasson P, Liljeqvist S, Nygren P Å, et al. Genetic design for facilitated production and recovery of recombinant proteins in Escherichia coli. Biotechnology and Applied Biochemistry, 2002, 35(2): 91.
pmid: 11916451
|
[29] |
Falak S, Sajed M, Rashid N. Strategies to enhance soluble production of heterologous proteins in Escherichia coli. Biologia, 2022, 77(3): 893-905.
doi: 10.1007/s11756-021-00994-5
|
[30] |
Studier F W, Rosenberg A H, Dunn J J, et al. Use of T7 RNA polymerase to direct expression of cloned genes. Methods in Enzymology, 1990, 185: 60-89.
pmid: 2199796
|
[31] |
Moffatt B A, Studier F W. T7 lysozyme inhibits transcription by T7 RNA polymerase. Cell, 1987, 49(2): 221-227.
pmid: 3568126
|
[32] |
Song X T, Zheng Y X, Liu Y D, et al. Conversion of recombinant human ferritin light chain inclusion bodies into uniform nanoparticles in Escherichia coli for facile production. Engineering in Life Sciences, 2022, 22(6): 453-463.
doi: 10.1002/elsc.v22.6
|
[33] |
Marbach A, Bettenbrock K. lac operon induction in Escherichia coli: systematic comparison of IPTG and TMG induction and influence of the transacetylase LacA. Journal of Biotechnology, 2012, 157(1): 82-88.
doi: 10.1016/j.jbiotec.2011.10.009
pmid: 22079752
|
[34] |
彭树英, 吕宁, 贾淑玲, 等. 应用自动诱导表达体系提高原核表达效率. 农业生物技术学报, 2009, 17(1):138-143.
|
|
Peng S Y, Lv N, Jia S L, et al. Higher prokaryotic expression efficiency achieved by auto-induction expression system. Journal of Agricultural Biotechnology, 2009, 17(1):138-143.
|
[35] |
Giladi H, Goldenberg D, Koby S, et al. Enhanced activity of the bacteriophage lambda PL promoter at low temperature. Proceedings of the National Academy of Sciences of the United States of America, 1995, 92(6): 2184-2188.
|
[36] |
Le Y L, Peng J J, Wu H W, et al. An approach to the production of soluble protein from a fungal gene encoding an aggregation-prone xylanase in Escherichia coli. PLoS One, 2011, 6(4): e18489.
doi: 10.1371/journal.pone.0018489
|
[37] |
Wunderlich M, Glockshuber R. Redox properties of protein disulfide isomerase (dsba) from Escherichia coli. Protein Science, 1993, 2(5): 717-726.
pmid: 8495194
|
[38] |
张彭湃, 王松廷.乳糖诱导剂促进P450 BM-3在大肠杆菌中可溶性表达的研究. 工业微生物, 2016, 46(4): 14-18.
|
|
Zhang P P, Wang S T. Enhanced soluble expression of cytochrome P450 BM-3 in E. coli by using lactose as inducer. Industrial Microbiology, 2016, 46(4):14-18.
|
[39] |
Narciandi R, Rivera J, Rodríguez D. Effect of induction strategy on the expression of different recombinant protein synthesized in Escherichia coli under the control of tryptophan promoter. Afinidad, 2016, 73(576).[2023-08-29]. https://scholar.cnki.net/zn/Detail/index/GARJ2016/SFJG7FC934BD4C25FADB0F7C46497A5B486E.
|
[40] |
Grunberg-Manago M. Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annual Review of Genetics, 1999, 33: 193-227.
pmid: 10690408
|
[41] |
Prinz W A, Åslund F, Holmgren A, et al. The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in the Escherichia coli cytoplasm. Journal of Biological Chemistry, 1997, 272(25): 15661-15667.
doi: 10.1074/jbc.272.25.15661
pmid: 9188456
|
[42] |
Tsai W C, Wu T C, Chiang B L, et al. Cloning, expression, and purification of recombinant major mango allergen Man i 1 in Escherichia coli. Protein Expression and Purification, 2017, 130: 35-43.
doi: 10.1016/j.pep.2016.06.009
|
[43] |
Boock J T, Waraho-Zhmayev D, Mizrachi D, et al. Beyond the cytoplasm of Escherichia coli:localizing recombinant proteins where you want them. insoluble proteins. New York: Humana Press, 2015: 79-97.
|
[44] |
Nik-Pa N I M, Abd-Aziz S, Ibrahim M F, et al. Improved extracellular secretion of β-cyclodextrin glycosyltransferase from Escherichia coli by glycine supplementation without apparent cell lysis. Asia Pacific Journal of Molecular Biology and Biotechnology, 2019, 27(2): 93-102.
|
[45] |
Mohamad Fuzi S F Z, Nor Ashikin N A L, Kheng Oon L. Screening the effect of the expression medium and growth conditions on the performance of engineered xylanase produced by immobilized recombinant E. coli. Jurnal Teknologi, 2023, 85(3): 183-193.
|
[46] |
Young C L, Britton Z T, Robinson A S. Recombinant protein expression and purification: a comprehensive review of affinity tags and microbial applications. Biotechnology Journal, 2012, 7(5): 620-634.
doi: 10.1002/biot.201100155
pmid: 22442034
|
[47] |
Kataeva I, Chang J, Xu H, et al. Improving solubility of Shewanella oneidensis MR-1 and Clostridium thermocellum JW-20 proteins expressed into Esherichia coli. Journal of Proteome Research, 2005, 4(6): 1942-1951.
pmid: 16335938
|
[48] |
Dyson M R, Shadbolt S P, Vincent K J, et al. Production of soluble mammalian proteins in Escherichia coli: identification of protein features that correlate with successful expression. BMC Biotechnology, 2004, 4: 32.
doi: 10.1186/1472-6750-4-32
|
[49] |
Tolun A A, Dickerson I M, Malhotra A. Overexpression and purification of human calcitonin gene-related peptide-receptor component protein in Escherichia coli. Protein Expression and Purification, 2007, 52(1): 167-174.
doi: 10.1016/j.pep.2006.09.008
|
[50] |
Frangioni J V, Neel B G. Solubilization and purification of enzymatically active glutathione S-transferase (pGEX) fusion proteins. Analytical Biochemistry, 1993, 210(1): 179-187.
pmid: 8489015
|
[51] |
Marblestone J G, Edavettal S C, Lim Y, et al. Comparison of SUMO fusion technology with traditional gene fusion systems:enhanced expression and solubility with SUMO. Protein Science: a Publication of the Protein Society, 2006, 15(1): 182-189.
|
[52] |
Bird L E. High throughput construction and small scale expression screening of multi-tag vectors in Escherichia coli. Methods, 2011, 55(1): 29-37.
doi: 10.1016/j.ymeth.2011.08.002
|
[53] |
Francis D M, Page R. Strategies to optimize protein expression in E. coli. Current Protocols in Protein Science, 2010, Chapter 5(1): 5.24.1-5.24.29.
|
[54] |
Butt T R, Edavettal S C, Hall J P, et al. SUMO fusion technology for difficult-to-express proteins. Protein Expression and Purification, 2005, 43(1): 1-9.
pmid: 16084395
|
[55] |
Lauber T, Marx U C, Schulz A, et al. Accurate disulfide formation in Escherichia coli: overexpression and characterization of the first domain (HF6478) of the multiple kazal-type inhibitor LEKTI. Protein Expression and Purification, 2001, 22(1): 108-112.
pmid: 11388807
|
[56] |
LaVallie E R, Lu Z J, Diblasio-Smith E A, et al. Thioredoxin as a fusion partner for production of soluble recombinant proteins in Escherichia coli. Methods in Enzymology, 2000, 326: 322-340.
pmid: 11036651
|
[57] |
Ki M R, Pack S P. Fusion tags to enhance heterologous protein expression. Applied Microbiology and Biotechnology, 2020, 104(6): 2411-2425.
doi: 10.1007/s00253-020-10402-8
pmid: 31993706
|
[58] |
Cserjan-Puschmann M, Lingg N, Engele P, et al. Production of circularly permuted caspase-2 for affinity fusion-tag removal: cloning, expression in Escherichia coli, purification, and characterization. Biomolecules, 2020, 10(12): 1592.
doi: 10.3390/biom10121592
|
[59] |
Malhotra A. Tagging for protein expression. Methods in Enzymology, 2009, 463: 239-258.
doi: 10.1016/S0076-6879(09)63016-0
pmid: 19892176
|
[60] |
Huang L Q, Agrawal T, Zhu G X, et al. DAXX represents a new type of protein-folding enabler. Nature, 2021, 597(7874): 132-137.
doi: 10.1038/s41586-021-03824-5
|
[61] |
Mital S, Christie G, Dikicioglu D. Recombinant expression of insoluble enzymes in Escherichia coli: a systematic review of experimental design and its manufacturing implications. Microbial Cell Factories, 2021, 20(1): 208.
doi: 10.1186/s12934-021-01698-w
|
[62] |
de Marco A. Protocol for preparing proteins with improved solubility by co-expressing with molecular chaperones in Escherichia coli. Nature Protocols, 2007, 2(10): 2632-2639.
pmid: 17948006
|
[63] |
Thomas J G, Ayling A, Baneyx F. Molecular chaperones, folding catalysts, and the recovery of active recombinant proteins from E. coli. Applied Biochemistry and Biotechnology, 1997, 66(3): 197-238.
doi: 10.1007/BF02785589
pmid: 9276922
|
[64] |
Nishihara K, Kanemori M, Yanagi H, et al. Overexpression of trigger factor prevents aggregation of recombinant proteins in Escherichia coli. Applied and Environmental Microbiology, 2000, 66(3): 884-889.
doi: 10.1128/AEM.66.3.884-889.2000
pmid: 10698746
|
[65] |
Mermans D, Nicolaus F, Baygin A, et al. Cotranslational folding of human growth hormone invitro and in Escherichia coli. FEBS Letters, 2023, 597(10): 1355-1362.
doi: 10.1002/feb2.v597.10
|
[66] |
Mogk A, Deuerling E, Vorderwülbecke S, et al. Small heat shock proteins, ClpB and the DnaK system form a functional triade in reversing protein aggregation. Molecular Microbiology, 2003, 50(2): 585-595.
doi: 10.1046/j.1365-2958.2003.03710.x
pmid: 14617181
|
[67] |
de Marco A, Deuerling E, Mogk A, et al. Chaperone-based procedure to increase yields of soluble recombinant proteins produced in E. coli. BMC Biotechnology, 2007, 7: 32-32.
pmid: 17565681
|
[68] |
Viitanen P V, Gatenby A A, Lorimer G H. Purified chaperonin 60 (groEL) interacts with the nonnative states of a multitude of Escherichia coli proteins. Protein Science: a Publication of the Protein Society, 1992, 1(3): 363-369.
|
[69] |
Marchenkov V V, Semisotnov G V. GroEL-assisted protein folding: does it occur within the chaperonin inner cavity? International Journal of Molecular Sciences, 2009, 10(5): 2066-2083.
doi: 10.3390/ijms10052066
pmid: 19564940
|
[70] |
Yu T H, Yi Y C, Shih I T, et al. Enhanced 5-aminolevulinic acid production by Co-expression of codon-optimized hemA gene with chaperone in genetic engineered Escherichia coli. Applied Biochemistry and Biotechnology, 2020, 191(1): 299-312.
doi: 10.1007/s12010-019-03178-9
|
[71] |
Lee S C, Olins P O. Effect of overproduction of heat shock chaperones GroESL and DnaK on human procollagenase production in Escherichia coli. Journal of Biological Chemistry, 1992, 267(5): 2849-2852.
pmid: 1346610
|
[72] |
Farajnia S, Ghorbanzadeh V, Dariushnejad H. Effect of molecular chaperone on the soluble expression of recombinant fab fragment in E. coli. International Journal of Peptide Research and Therapeutics, 2020, 26(1): 251-258.
doi: 10.1007/s10989-019-09833-3
|
[73] |
Malekian R, Sima S, Jahanian-Najafabadi A, et al. Improvement of soluble expression of GM-CSF in the cytoplasm of Escherichia coli using chemical and molecular chaperones. Protein Expression and Purification, 2019, 160: 66-72.
doi: S1046-5928(19)30047-6
pmid: 30998976
|
[74] |
Yousefi M, Farajnia S, Mokhtarzadeh A, et al. Soluble expression of humanized anti-CD20 single chain antibody in Escherichia coli by cytoplasmic chaperones co-expression. Avicenna Journal of Medical Biotechnology, 2018, 10: 141-146.
|
[75] |
Lee G J, Vierling E. A small heat shock protein cooperates with heat shock protein 70 systems to reactivate a heat-denatured protein. Plant Physiology, 2000, 122(1): 189-198.
doi: 10.1104/pp.122.1.189
pmid: 10631262
|
[76] |
Liu C, Feng H, Liu Y C, et al. Soluble FMDV VP 1 proteins fused with calreticulin expressed in Escherichia coli under the assist of trigger factor16 (Tf16) formed into high immunogenic polymers. International Journal of Biological Macromolecules, 2020, 155: 1532-1540.
doi: 10.1016/j.ijbiomac.2019.11.130
|
[77] |
Piao D C, Shin D W, Kim I S, et al. Trigger factor assisted soluble expression of recombinant spike protein of porcine epidemic diarrhea virus in Escherichia coli. BMC Biotechnology, 2016, 16(1): 1-9.
doi: 10.1186/s12896-015-0230-0
|
[78] |
Beygmoradi A, Homaei A, Hemmati R, et al. Recombinant protein expression: challenges in production and folding related matters. International Journal of Biological Macromolecules, 2023, 233: 123407.
doi: 10.1016/j.ijbiomac.2023.123407
|
[79] |
Wacker M, Linton D, Hitchen P G, et al. N-linked glycosylation in Campylobacter jejuni and its functional transfer into E. coli. Science, 2002, 298(5599): 1790-1793.
doi: 10.1126/science.298.5599.1790
|
[80] |
Linton D, Dorrell N, Hitchen P G, et al. Functional analysis of the Campylobacter jejuni N-linked protein glycosylation pathway. Molecular Microbiology, 2005, 55(6): 1695-1703.
doi: 10.1111/j.1365-2958.2005.04519.x
|
[81] |
Sørensen H P, Kristensen J E, Sperling-Petersen H U, et al. Soluble expression of aggregating proteins by covalent coupling to the ribosome. Biochemical and Biophysical Research Communications, 2004, 319(3): 715-719.
pmid: 15184041
|
[82] |
Dragosits M, Nicklas D, Tagkopoulos I. A synthetic biology approach to self-regulatory recombinant protein production in Escherichia coli. Journal of Biological Engineering, 2012, 6: 2-2.
doi: 10.1186/1754-1611-6-2
pmid: 22463687
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|