工业微生物的设计、改造与应用专题 |
|
|
|
|
高效合成倍半萜酿酒酵母的构建策略* |
李然1,闫晓光1,李伟国1,梁冬梅2,财音青格乐1,乔建军1,2,**() |
1 天津大学化工学院 天津 300072 2 天津大学浙江绍兴研究院 绍兴 312300 |
|
Strategies of Engineering Saccharomyces cerevisiae for High-efficiency Synthesis of Sesquiterpenes |
LI Ran1,YAN Xiao-guang1,LI Wei-guo1,LIANG Dong-mei2,CAI YIN Qing-ge-le1,QIAO Jian-jun1,2,**() |
1 School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China 2 Zhejiang Shaoxing Research Institute of Tianjin University, Shaoxing 312300, China |
引用本文:
李然,闫晓光,李伟国,梁冬梅,财音青格乐,乔建军. 高效合成倍半萜酿酒酵母的构建策略*[J]. 中国生物工程杂志, 2022, 42(1/2): 14-25.
LI Ran,YAN Xiao-guang,LI Wei-guo,LIANG Dong-mei,CAI YIN Qing-ge-le,QIAO Jian-jun. Strategies of Engineering Saccharomyces cerevisiae for High-efficiency Synthesis of Sesquiterpenes. China Biotechnology, 2022, 42(1/2): 14-25.
链接本文:
https://manu60.magtech.com.cn/biotech/CN/10.13523/j.cb.2110033
或
https://manu60.magtech.com.cn/biotech/CN/Y2022/V42/I1/2/14
|
[1] |
Mai J, Li W J, Ledesma-Amaro R, et al. Engineering plant sesquiterpene synthesis into yeasts: a review. Journal of Agricultural and Food Chemistry, 2021, 69(33):9498-9510.
doi: 10.1021/acs.jafc.1c03864
|
[2] |
Ferreira F M, Palmeira C M, Oliveira M M, et al. Nerolidol effects on mitochondrial and cellular energetics. Toxicology in Vitro, 2012, 26(2):189-196.
doi: 10.1016/j.tiv.2011.11.009
|
[3] |
McGinty D, Letizia C S, Api A M. Addendum to fragrance material review on nerolidol (isomer unspecified). Food and Chemical Toxicology, 2010, 48:S43-S45.
doi: 10.1016/j.fct.2009.11.008
|
[4] |
赵雅坤. 代谢工程改造解脂耶式酵母生物合成红没药烯的研究. 天津: 天津科技大学, 2020.
|
|
Zhao Y K. Metabolic engineering of the oleaginous yeast Yarrowia lipolytica for microbial synthesis of bisabolene. Tianjin: Tianjin University of Science and Technology, 2020.
|
[5] |
Peralta-Yahya P P, Ouellet M, Chan R, et al. Identification and microbial production of a terpene-based advanced biofuel. Nature Communications, 2011, 2:483.
doi: 10.1038/ncomms1494
pmid: 21952217
|
[6] |
陈伟. α-红没药醇对人肝癌HepG2细胞凋亡作用的研究. 武汉: 武汉大学, 2010.
|
|
Chen W. Study on the apoptotic effect of α-bisabolol on human hepatoma HepG2 cell line. Wuhan: Wuhan University, 2010.
|
[7] |
Buijs N A, Siewers V, Nielsen J. Advanced biofuel production by the yeast Saccharomyces cerevisiae. Current Opinion in Chemical Biology, 2013, 17(3):480-488.
doi: 10.1016/j.cbpa.2013.03.036
|
[8] |
Lee K S, Kim G H, Kim H H, et al. Volatile compounds of Panax ginseng C.A. Meyer cultured with different cultivation methods. Journal of Food Science, 2012, 77(7):C805-C810.
doi: 10.1111/jfds.2012.77.issue-7
|
[9] |
Jung J I, Kim E J, Kwon G T, et al. Β-Caryophyllene potently inhibits solid tumor growth and lymph node metastasis of B16F10 melanoma cells in high-fat diet-induced obese C57BL/6N mice. Carcinogenesis, 2015, 36(9):1028-1039.
doi: 10.1093/carcin/bgv076
pmid: 26025912
|
[10] |
di Sotto A, Mancinelli R, Gullì M, et al. Chemopreventive potential of caryophyllane sesquiterpenes: an overview of preliminary evidence. Cancers, 2020, 12(10):3034.
doi: 10.3390/cancers12103034
|
[11] |
Harvey B G, Merriman W W, Koontz T A. High-density renewable diesel and jet fuels prepared from multicyclic sesquiterpanes and a 1-hexene-derived synthetic paraffinic kerosene. Energy & Fuels, 2015, 29(4):2431-2436.
doi: 10.1021/ef5027746
|
[12] |
George K W, Alonso-Gutierrez J, Keasling J D, et al. Isoprenoid drugs, biofuels, and chemicals:artemisinin, farnesene, and beyond. Advances in Biochemical Engineering/ Biotechnology, 2015, 148:355-389.
|
[13] |
Wang J H, Jiang W, Liang C J, et al. Overproduction of α-farnesene in Saccharomyces cerevisiae by farnesene synthase screening and metabolic engineering. Journal of Agricultural and Food Chemistry, 2021, 69(10):3103-3113.
doi: 10.1021/acs.jafc.1c00008
|
[14] |
Meadows A L, Hawkins K M, Tsegaye Y, et al. Rewriting yeast central carbon metabolism for industrial isoprenoid production. Nature, 2016, 537(7622):694-697.
doi: 10.1038/nature19769
|
[15] |
Li W G, Yan X G, Zhang Y T, et al. Characterization of trans-nerolidol synthase from Celastrus angulatus maxim and production of trans-nerolidol in engineered Saccharomyces cerevisiae. Journal of Agricultural and Food Chemistry, 2021, 69(7):2236-2244.
doi: 10.1021/acs.jafc.0c06084
|
[16] |
Zhang C B, Li M, Zhao G R, et al. Harnessing yeast peroxisomes and cytosol acetyl-CoA for sesquiterpene α-humulene production. Journal of Agricultural and Food Chemistry, 2020, 68(5):1382-1389.
doi: 10.1021/acs.jafc.9b07290
|
[17] |
Zhang W X, Guo J Q, Wang Z, et al. Improved production of germacrene A, a direct precursor of ?-elemene, in engineered Saccharomyces cerevisiae by expressing a cyanobacterial germacrene A synthase. Microbial Cell Factories, 2021, 20(1):7.
doi: 10.1186/s12934-020-01500-3
|
[18] |
Kwak S, Yun E J, Lane S, et al. Redirection of the glycolytic flux enhances isoprenoid production in Saccharomyces cerevisiae. Biotechnology Journal, 2020, 15(2):e1900173.
|
[19] |
Liu M, Lin Y C, Guo J J, et al. High-level production of sesquiterpene patchoulol in Saccharomyces cerevisiae. ACS Synthetic Biology, 2021, 10(1):158-172.
doi: 10.1021/acssynbio.0c00521
|
[20] |
Heyland J, Fu J N, Blank L M. Correlation between TCA cycle flux and glucose uptake rate during respiro-fermentative growth of Saccharomyces cerevisiae. Microbiology (Reading, England), 2009, 155(Pt 12):3827-3837.
doi: 10.1099/mic.0.030213-0
|
[21] |
Starai V J, Escalante-Semerena J C. Acetyl-coenzyme A synthetase (AMP forming). Cellular and Molecular Life Sciences CMLS, 2004, 61(16):2020-2030.
|
[22] |
Shiba Y, Paradise E M, Kirby J, et al. Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids. Metabolic Engineering, 2007, 9(2):160-168.
doi: 10.1016/j.ymben.2006.10.005
|
[23] |
Wegner S A, Chen J M, Ip S S, et al. Engineering acetyl-CoA supply and ERG9 repression to enhance mevalonate production in Saccharomyces cerevisiae. Journal of Industrial Microbiology and Biotechnology, 2021, 48(9-10):kuab050.
doi: 10.1093/jimb/kuab050
|
[24] |
Shi W Q, Li J, Chen Y F, et al. Metabolic engineering of Saccharomyces cerevisiae for ethyl acetate biosynthesis. ACS Synthetic Biology, 2021, 10(3):495-504.
doi: 10.1021/acssynbio.0c00446
|
[25] |
Chen Y, Daviet L, Schalk M, et al. Establishing a platform cell factory through engineering of yeast acetyl-CoA metabolism. Metabolic Engineering, 2013, 15:48-54.
doi: 10.1016/j.ymben.2012.11.002
pmid: 23164578
|
[26] |
Ratledge C, Wynn J P. The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms. Advances in Applied Microbiology, 2002, 51:1-51.
pmid: 12236054
|
[27] |
Rodriguez S, Denby C M, van Vu T, et al. ATP citrate lyase mediated cytosolic acetyl-CoA biosynthesis increases mevalonate production in Saccharomyces cerevisiae. Microbial Cell Factories, 2016, 15:48.
doi: 10.1186/s12934-016-0447-1
pmid: 26939608
|
[28] |
Cardenas J, da Silva N A. Engineering cofactor and transport mechanisms in Saccharomyces cerevisiae for enhanced acetyl-CoA and polyketide biosynthesis. Metabolic Engineering, 2016, 36:80-89.
doi: S1096-7176(16)00030-6
pmid: 26969250
|
[29] |
Zhang Y M, Su M, Qin N, et al. Expressing a cytosolic pyruvate dehydrogenase complex to increase free fatty acid production in Saccharomyces cerevisiae. Microbial Cell Factories, 2020, 19(1):226.
doi: 10.1186/s12934-020-01493-z
|
[30] |
Schadeweg V, Boles E. N-Butanol production in Saccharomyces cerevisiae is limited by the availability of coenzyme A and cytosolic acetyl-CoA. Biotechnology for Biofuels, 2016, 9:44.
doi: 10.1186/s13068-016-0456-7
pmid: 26913077
|
[31] |
Sandoval C M, Ayson M, Moss N, et al. Use of pantothenate as a metabolic switch increases the genetic stability of farnesene producing Saccharomyces cerevisiae. Metabolic Engineering, 2014, 25:215-226.
doi: 10.1016/j.ymben.2014.07.006
pmid: 25076380
|
[32] |
Polakowski T, Stahl U, Lang C. Overexpression of a cytosolic hydroxymethylglutaryl-CoA reductase leads to squalene accumulation in yeast. Applied Microbiology and Biotechnology, 1998, 49(1):66-71.
pmid: 9487712
|
[33] |
Hampton R Y, Rine J. Regulated degradation of HMG-CoA reductase, an integral membrane protein of the endoplasmic Reticulum, in yeast. The Journal of Cell Biology, 1994, 125(2):299-312.
doi: 10.1083/jcb.125.2.299
|
[34] |
Donald K A, Hampton R Y, Fritz I B. Effects of overproduction of the catalytic domain of 3-hydroxy-3-methylglutaryl coenzyme A reductase on squalene synthesis in Saccharomyces cerevisiae. Applied and Environmental Microbiology, 1997, 63(9):3341-3344.
doi: 10.1128/aem.63.9.3341-3344.1997
pmid: 9292983
|
[35] |
Huh W K, Falvo J V, Gerke L C, et al. Global analysis of protein localization in budding yeast. Nature, 2003, 425(6959):686-691.
doi: 10.1038/nature02026
|
[36] |
Ignea C, Cvetkovic I, Loupassaki S, et al. Improving yeast strains using recyclable integration cassettes, for the production of plant terpenoids. Microbial Cell Factories, 2011, 10:4.
doi: 10.1186/1475-2859-10-4
|
[37] |
Asadollahi M A, Maury J, Schalk M, et al. Enhancement of farnesyl diphosphate pool as direct precursor of sesquiterpenes through metabolic engineering of the mevalonate pathway in Saccharomyces cerevisiae. Biotechnology and Bioengineering, 2010, 106(1):86-96.
doi: 10.1002/bit.22668
pmid: 20091767
|
[38] |
Steussy C N, Robison A D, Tetrick A M, et al. A structural limitation on enzyme activity: the case of HMG-CoA synthase. Biochemistry, 2006, 45(48):14407-14414.
pmid: 17128980
|
[39] |
Pitera D J, Paddon C J, Newman J D, et al. Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metabolic Engineering, 2007, 9(2):193-207.
doi: 10.1016/j.ymben.2006.11.002
|
[40] |
Paramasivan K, Mutturi S. Regeneration of NADPH coupled with HMG-CoA reductase activity increases squalene synthesis in Saccharomyces cerevisiae. Journal of Agricultural and Food Chemistry, 2017, 65(37):8162-8170.
doi: 10.1021/acs.jafc.7b02945
pmid: 28845666
|
[41] |
Chen H L, Li M J, Liu C Q, et al. Enhancement of the catalytic activity of Isopentenyl diphosphate isomerase (IDI) from Saccharomyces cerevisiae through random and site-directed mutagenesis. Microbial Cell Factories, 2018, 17(1):65.
doi: 10.1186/s12934-018-0913-z
|
[42] |
Hu Z H, Li H X, Weng Y R, et al. Improve the production of d-limonene by regulating the mevalonate pathway of Saccharomyces cerevisiae during alcoholic beverage fermentation. Journal of Industrial Microbiology and Biotechnology, 2020, 47(12):1083-1097.
doi: 10.1007/s10295-020-02329-w
|
[43] |
Ma B, Liu M, Li Z H, et al. Significantly enhanced production of patchoulol in metabolically engineered Saccharomyces cerevisiae. Journal of Agricultural and Food Chemistry, 2019, 67(31):8590-8598.
doi: 10.1021/acs.jafc.9b03456
|
[44] |
Tippmann S, Anfelt J, David F, et al. Affibody scaffolds improve sesquiterpene production in Saccharomyces cerevisiae. ACS Synthetic Biology, 2017, 6(1):19-28.
doi: 10.1021/acssynbio.6b00109
pmid: 27560952
|
[45] |
Chatzivasileiou A O, Ward V, Edgar S M, et al. Two-step pathway for isoprenoid synthesis. Proceedings of the National Academy of Sciences of the United States of America, 2019, 116(2):506-511.
|
[46] |
Liu H, Chen S L, Xu J Z, et al. Dual regulation of cytoplasm and peroxisomes for improved Α-farnesene production in recombinant Pichia pastoris. ACS Synthetic Biology, 2021, 10(6):1563-1573.
doi: 10.1021/acssynbio.1c00186
|
[47] |
Clomburg J M, Qian S, Tan Z G, et al. The isoprenoid alcohol pathway, a synthetic route for isoprenoid biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 2019, 116(26):12810-12815.
|
[48] |
Scalcinati G, Partow S, Siewers V, et al. Combined metabolic engineering of precursor and co-factor supply to increase α-santalene production by Saccharomyces cerevisiae. Microbial Cell Factories, 2012, 11:117.
doi: 10.1186/1475-2859-11-117
pmid: 22938570
|
[49] |
Asadollahi M A, Maury J, M?ller K, et al. Production of plant sesquiterpenes in Saccharomyces cerevisiae: effect of ERG9 repression on sesquiterpene biosynthesis. Biotechnology and Bioengineering, 2008, 99(3):666-677.
pmid: 17705244
|
[50] |
Yuan J F, Ching C B. Dynamic control of ERG9 expression for improved amorpha-4, 11-diene production in Saccharomyces cerevisiae. Microbial Cell Factories, 2015, 14:38.
doi: 10.1186/s12934-015-0220-x
|
[51] |
Callari R, Meier Y, Ravasio D, et al. Dynamic control of ERG20 and ERG9 expression for improved casbene production in Saccharomyces cerevisiae. Frontiers in Bioengineering and Biotechnology, 2018, 6:160.
doi: 10.3389/fbioe.2018.00160
|
[52] |
Shishova E Y, di Costanzo L, Cane D E, et al. X-ray crystal structure of aristolochene synthase from Aspergillus terreus and evolution of templates for the cyclization of farnesyl diphosphate. Biochemistry, 2007, 46(7):1941-1951.
doi: 10.1021/bi0622524
|
[53] |
Shishova E Y, Yu F L, Miller D J, et al. X-ray crystallographic studies of substrate binding to aristolochene synthase suggest a metal ion binding sequence for catalysis. Journal of Biological Chemistry, 2008, 283(22):15431-15439.
doi: 10.1074/jbc.M800659200
|
[54] |
Ban Z N, Qin H, Mitchell A J, et al. Noncatalytic chalcone isomerase-fold proteins in Humulus lupulus are auxiliary components in prenylated flavonoid biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115(22):E5223-E5232.
|
[55] |
Li W G, Yan X G, Zhang Y T, et al. Characterization of trans-nerolidol synthase from Celastrus angulatus maxim and production of trans-nerolidol in engineered Saccharomyces cerevisiae. Journal of Agricultural and Food Chemistry, 2021, 69(7):2236-2244.
doi: 10.1021/acs.jafc.0c06084
|
[56] |
Li J X, Fang X, Zhao Q, et al. Rational engineering of plasticity residues of sesquiterpene synthases from Artemisia annua: product specificity and catalytic efficiency. The Biochemical Journal, 2013, 451(3):417-426.
doi: 10.1042/BJ20130041
|
[57] |
Fang X, Li J X, Huang J Q, et al. Systematic identification of functional residues of Artemisia annua amorpha-4, 11-diene synthase. The Biochemical Journal, 2017, 474(13):2191-2202.
doi: 10.1042/BCJ20170060
|
[58] |
Shukal S, Chen X X, Zhang C Q. Systematic engineering for high-yield production of viridiflorol and amorphadiene in auxotrophic Escherichia coli. Metabolic Engineering, 2019, 55:170-178.
doi: S1096-7176(19)30215-0
pmid: 31326469
|
[59] |
Yoshikuni Y, Ferrin T E, Keasling J D. Designed divergent evolution of enzyme function. Nature, 2006, 440(7087):1078-1082.
doi: 10.1038/nature04607
|
[60] |
Bogorad I W, Lin T S, Liao J C. Synthetic non-oxidative glycolysis enables complete carbon conservation. Nature, 2013, 502(7473):693-697.
doi: 10.1038/nature12575
|
[61] |
Kocharin K, Siewers V, Nielsen J. Improved polyhydroxybutyrate production by Saccharomyces cerevisiae through the use of the phosphoketolase pathway. Biotechnology and Bioengineering, 2013, 110(8):2216-2224.
doi: 10.1002/bit.v110.8
|
[62] |
de Jong B W, Shi S B, Siewers V, et al. Improved production of fatty acid ethyl esters in Saccharomyces cerevisiae through up-regulation of the ethanol degradation pathway and expression of the heterologous phosphoketolase pathway. Microbial Cell Factories, 2014, 13(1):39.
doi: 10.1186/1475-2859-13-39
|
[63] |
Andersen J L, Flamm C, Merkle D, et al. Chemical transformation motifs: modelling pathways as integer hyperflows. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 16(2):510-523.
doi: 10.1109/TCBB.2017.2781724
pmid: 29990045
|
[64] |
Vögeli B, Engilberge S, Girard E, et al. Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site. Proceedings of the National Academy of Sciences of the United States of America, 2018, 115(13):3380-3385.
|
[65] |
Casey W M, Keesler G A, Parks L W. Regulation of partitioned sterol biosynthesis in Saccharomyces cerevisiae. Journal of Bacteriology, 1992, 174(22):7283-7288.
pmid: 1429452
|
[66] |
Faulkner A, Chen X M, Rush J, et al. The LPP1 and DPP1 gene products account for most of the isoprenoid phosphate phosphatase activities in Saccharomyces cerevisiae. Journal of Biological Chemistry, 1999, 274(21):14831-14837.
doi: 10.1074/jbc.274.21.14831
pmid: 10329682
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|