| [1] Henry R J. Plant Genotyping:the DNA Fingerprinting of Plants. Wallingford,UK:CABI, 2001.
[2] van Tienderen P H, De haan A A, Van der Linden C G, et al. Biodiversity assessment using markers for ecologically important traits. Trends Ecology Evolution, 2002, 17(12):577-582.
[3] Pang M X, Percy R G, Hughs E, et al. Promoter anchored amplified polymorphism based on random amplified polymorphic DNA (PAAP-RAPD) in cotton. Euphytica, 2009, 167(3):281-291.
[4] Williams J G K, Kubelik A R, Livak K J, et al. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 1990, 18(22):6531-6535.
[5] Powell W, Morgante M, Andre C, et al. The comparison of RFLP, RAPDs, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding, 1996, 2(3):225-238.
[6] Cardle L, Ramsay L, Milboume D, et al. Computation and experimental characterization of physically clustered simple sequence repeats in plants. Genetices, 2000, 156(2):847-854.
[7] Wang D G, Fan J B, Siao C J, et al. Large-scale identification mapping and genotyping of single nucleotide polymorphisms in the human genome. Science, 1998, 280(5366):1077-1082.
[8] Rafalski J A, Tingey S V. Genetic diagnostics in plant breeding:RAPDs, microsatellites and machines. Trend Genet, 1993, 9:275-280.
[9] Andersen J R, Lübberstedt T. Functional markers in plants. Trends in Plant Science, 2003, 8(11):554-560.
[10] Arnaud-Haond S, Alberto F, Teixeira S, et al. Assessing genetic diversity in clonal organisms:low diversity or low resolution? Combining power and cost efficiency in selecting markers. Journal of Heredity, 2005, 96(4):434-440.
[11] Varshney R K, Mahendar T, Aggarwal R K. Genic Molecular Markers in Plants:Development and Applications. In:Varshney R K, Tuberosa R.Genomic-assisted Crop Improvement:vol.1. Genomics Approaches and Platforms. New York:Springer, 2007:13-29.
[12] 王昊龙, 韩俊杰, 李淼淼,等.功能标记的开发及在禾谷类作物中的应用. 核农学报, 2014, 28(11):1963-1971. Wang H L, Han J J, Li M M, et al. Development and application of functional markers in cereal crops. Journal of Nuclear Agricultural Sciences, 2014, 28(11):1963-1971.
[13] Panwar P, Saini R K, Sharma N, et al. Efficiency of RAPD, SSR and cytochrome P450 gene based markers in accessing genetic variability amongst finger millet (Eleusine coracana) accessions. Molecular Biology Reports, 2010, 37(8):4075-4082.
[14] Schalk M, Nedelkina S, Schoch G, et al. Role of unusual amino acid residues in the proximal and distal heme regions of a plant P450, CYP73A1. Biochemistry, 1999, 38(19):6093-6103.
[15] Collard B C Y, Mackill D J. Conserved DNA-derived polymorphism (CDDP):a simple and novel method for generating DNA markers in plants. Plant Molecular Biology Reporter, 2009, 27(4):558-562.
[16] Galasso I, Manca A, Braglia L, et al. h-TBP:an approach based on intron-length polymorphism for the rapid isolation and characterization of the multiple members of the β-tubulin gene family in Camelina sativa (L.) Crantz. Molecular Breeding, 2011, 28(4):635-645.
[17] Weining S, Langridge P. Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction. Theoretical and Applied Genetics. Theoretische und angewandte Genetik, 1991, 82(2):209-216.
[18] Bardini M, Lee D, Donini P, Mariani A. Tubulin-based polymorphism (TBP):a new tool, based on functionally relevant sequences, to assess genetic diversity in plant species. Genome, 2004, 291:281-291.
[19] Jin H, Martin C. Multifunctionality and diversity within the plant MYB-gene family. Plant Molecular Biology, 1999, 41(5):577-585.
[20] Feschotte C, Jiang N, Wessler S R. Plant transposable elements:where genetics meets genomics. Nature Reviews Genetics, 2002, 3(5):329-341.
[21] Hill P, Burford D, Martin D M A, et al. Retrotransposon populations of Vicia species with varying genome size. Molecular Genetics and Genomics Mgg, 2005, 273(5):371-381.
[22] Finnegan D J. Eukaryotic transposable elements and genome evolution. Trends in Genetics, 1989, 5(4):103-107.
[23] Wicker T, Sabot F, Hua-Van A, et al. A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics, 2007, 8(12):973-982.
[24] Kumar A, Bennetzen J L. Plant retrotransposons. The Annual Review of Genetics, 1999, 33(1):479-532.
[25] Kenward K D, Bai D, Ban M R, et al. Isolation and characterization of Tnd-1, a retrotransposon marker linked to black root rot resistance in tobacco. Theoretical and Applied Genetics, 1999, 98(3):387-395.
[26] Kalendar R, Grob T, Regina M, et al. IRAP and REMAP:two new retrotransposon-based DNA fingerprinting techniques. Theoretical and Applied Genetics, 1999, 98(5):704-711.
[27] Branco C J S, Vieira E A, Malone G, et al. IRAP and REMAP assessments of genetic similarity in rice. Journal of Applied Genetics, 2007, 48(2):107-113.
[28] Seibt K M, Wenke T, Wollrab C, et al. Development and application of SINE-based markers for genotyping of potato varieties. Theoretical and Applied Genetics. Theoretische und angewandte Genetik, 2012, 125(1):185-196.
[29] Kalendar R, Antonius K, Smý kal P, et al. iPBS:a universal method for DNA fingerprinting and retrotransposon isolation. Theoretical and Applied Genetics, Theoretische und angewandte Genetik, 2010,121:1419-1430.
[30] Waugh R, McLean K, Flavell A J, et al. Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Molecular and General Genetics Mgg, 1997, 253(6):687-694.
[31] Tam S M, Mhiri C, Vogelaar A, et al. Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theoretical and Applied Genetics, 2005, 110(5):819-831.
[32] Schulman AH. Molecular markers to assess genetic diversity. Euphytica, 2006,158(3):313-321.
[33] Jones J D G, Dangl J L. The plant immune system. Nature, 2006, 444(7117):323-329.
[34] Wolpert T J, Dunkle L D, Ciuffetti L M. Host-selective toxins and avirulence determinants:what's in a name?. Annual Review Phytopathology, 2002, 40(1):251-285.
[35] Gebhardt C, Valkonen J P. Organization of genes controlling disease resistance in the potato genome. Annual Review of Phytopathology, 2001, 39(4):79-102.
[36] Tian Y P, Valkonen J P. Genetic determinants of Potato virus Y required to overcome or trigger hypersensitive resistance to PVY strain group O controlled by the gene Ny in potato. Molecular Plant Microbe Interact, 2012,26(3):297-305.
[37] van Ooijen G, van den Burg H A, Cornelissen B J C, et al. Structure and function of resistance proteins in solanaceous plants. Annual Review Phytopatholy, 2007, 45(1):43-72.
[38] Martin G B, Bogdanove A J, Sessa G. Understanding the functions of plant disease resistance proteins. Annual Review of Plant Biology, 2003, 54(1):23-61.
[39] Takken F L, Albrecht M, Tameling W I. Resistance proteins:molecular switches of plant defence. Current Opinion in Plant Biology, 2006, 9(4):383-390.
[40] Brugmans B, Wouters D, van Os H, et al. Genetic mapping and transcription analyses of resistance gene loci in potato using NBS profiling. Theoretical and Applied Genetics, 2008, 117(8):1379-1388.
[41] Wang M, Berg R, Linden G, Vosman B. The utility of NBS profiling for plant systematics:a first study in tuber-bearing Solanum species. Plant Systematics and Evolution, 2008, 276(1-2):137-148.
[42] van der Linden C G, Wouters D C A E, Mihalka V, et al. Efficient targeting of plant disease resistance loci using NBS profiling. Theoretical and Applied Genetics, 2004, 14(2):421-429.
[43] Gebhardt C, Bellin D, Henselewski H, et al. Marker-assisted combination of major genes for pathogen resistance in potato. Theoretical and Applied Genetics, 2006, 112(8):1458-1464.
[44] Gupta P K, Rustgi S. Molecular markers from the transcribed/expressed region of the genome in higher plants. Functional and Integrative Genomics, 2004, 4(3):139-162.
[45] Gui Y, Yan G, Bo S, et al. iSNAP:a small RNA-based molecular marker technique. Plant Breeding, 2011, 130(5):515-520.
[46] Bachem C, Oomen R, Visser R. Transcript imaging with cDNA-AFLP:a stepby-step protocol. Plant Molecular Biology Reporter, 1998, 16(2):157-173.
[47] Xiao X, Li H, Tang C. A silver-staining cDNA-AFLP protocol suitable for transcript profiling in the latex of Hevea brasiliensis (para rubber tree). Molecular Biotechnology, 2009, 42(1):91-99.
[48] Song Y, Wang Z, Bo W, et al. Transcriptional profiling by cDNA-AFLP analysis showed differential transcript abundance in response to water stress in Populus hopeiensis. BMC Genomics, 2012, 13(1):286.
[49] Brugmans B, Fernandez del Carmen A, Bachem C W B, et al. A novel method for the construction of genome wide transcriptome maps. Plant Journal, 2002, 31(2):211-222.
[50] Kashkush K, Feldman M, Levy A A. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics, 2002, 160(4):1651-1659.
[51] Suárez M C, Bernal A, Gutiérrez J, et al. Developing expressed sequence tags (ESTs) from polymorphic transcript-derived fragments (TDFs) in cassava (Manihot esculenta Crantz). Genome, 2000, 43(1):62-67.
[52] Bryan G J, Stephenson P, Collins A, et al. Low levels of DNA sequence variation among adapted genotypes of hexaploid wheat. Theoretical and Applied Genetics, 1999,99(1-2):192-198.
[53] Gentzbittel L, Mestries E, Mouzeyar S, et al. A composite map of expressed sequences and phenotypic traits of the sunflower (Helianthus annuus L.) genome. Theoretical and Applied Genetics, 1999, 99(1-2):218-234.
[54] Akhunov E D, Goodyear A W, Geng S, et al. The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Research, 2003, 13(5):753-763.
[55] Woodhead M, Russell J, Squirrell J, et al. Development of EST-SSRs from the alpine lady-fern, Athyrium distentifolium. Molecular Ecology Notes, 2003, 3(2):287-290.
[56] Cho Y G, Ishii T, Trmnykh S, et al. Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.). Theoretical and Applied Genetics, 2000, 100(5):713-722.
[57] Eujayl I, Sledge M K, Wang L, et al. Medicago truncatula EST-SSRs reveal cross-species genetic markers for Medicago spp. Theoretical and Applied Genetics, theoretische und angewandte Genetik, 2004, 108(3):414-422. |
