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中国生物工程杂志

China Biotechnology
China Biotechnology  2016, Vol. 36 Issue (11): 63-69    DOI: 10.13523/j.cb.20161109
    
Method and Application of Gene Knockout Based Single Cross in Bacillus licheniformis 20085
HAN Hai hong, WANG Jun qing, WANG Teng fei, XIAO Jing, HAN Deng lan, WANG Rui ming
Qilu University of Technology, Biological Engineering, Jinan 250353, China
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Abstract  

Bacillus licheniformis 20085 has fast breeding, adaptability and strong lignocellulose degradation characteristics than other lignocellulose-degrading microorganisms, it also plays an important role in the process of degradation of natural lignocellulosic, however, it could not be as lignin degradation strain of bio-pulping due to it also has a strong ability to degrade cellulose.An endo-1,4-β-D-glucanohydrolase (CMCase) gene celb in Bacillus licheniformis 20085 was intended to knockout, about 500bp DNA fragment celb1 in celb gene with the chloramphenicol resistance gene (Cmr) connected by using overlapping PCR technique, thus, after a single enzyme digestionat the end of fragment, recombinant gene fragment was transformed into B. licheniformis 20085 competent cells. Through a single homologous exchange, the resistance gene Cmr was inserted into the celb gene, thereby, the target gene was knocked out successfully. After chloramphenicol resistance experiments, PCR determination, The celb gene deletion strain B. licheniformis 20085Δcelb successfully was obtained; The verification results offer mentation shows, the ability of the filter paper disintegration of B. licheniformis 20085Δcelb reduced significantly than the original strain. B. licheniformis 20085Δcelb than the original strain disintegrating paper capacity significantly reduced; After 60h fermentation, the activity of CMCase was decreased from 1.86U/ml to 0.50U/ml, and it shown that celb gene in Bacillus licheniformis plays an important role in the process of degradation of cellulose. Conclusion:The combination between the principle of single cross of homologous recombination and overlapping PCR technology enables a targeted gene to achieve quick knockout in Bacillus licheniformis, or even provides a new means for the rapid identification of gene function for other microorganisms.



Key wordsBacillus licheniformis      Single-crossover      celb gene      Gene knockout     
Received: 04 May 2016      Published: 25 November 2016
ZTFLH:  Q78  
Cite this article:

HAN Hai hong, WANG Jun qing, WANG Teng fei, XIAO Jing, HAN Deng lan, WANG Rui ming. Method and Application of Gene Knockout Based Single Cross in Bacillus licheniformis 20085. China Biotechnology, 2016, 36(11): 63-69.

URL:

https://manu60.magtech.com.cn/biotech/10.13523/j.cb.20161109     OR     https://manu60.magtech.com.cn/biotech/Y2016/V36/I11/63

[1] Meng X,Wu Q,Wang L. Improving flavor metabolism of Saccharomyces cerevisiae by mixed culture with Bacillus licheniformis for Chinese Maotai-flavor liquor making. Journal of Industrial Microbiology & Biotechnology, 2015, 42(12):1601-1608.
[2] Muhammad J, Salma Z, Muhammad A, et al. Role of Bacillus licheniformis in phytoremediation of nickel contaminated soil cultivated with rice. International Journal of Phytoremediation, 2014, 16(6):554-571.
[3] Bora L. Purification and characterization of highly alkaline lipase from Bacillus licheniformis MTCC 2465:and study of its detergent compatibility and applicability. Journal of Surfactants and Detergents, 2014, 17(5):889-898.
[4] 陈丽燕,张光祥,黄春萍,等.两株高产纤维素酶细菌的筛选、鉴定及酶学特性.微生物学通报,2011,38(4):531-538. Chen L Y, Zhang G X, Huang C P, et al. Isolation, identification and enzymatic characteristics of cellulose-producing strains with high cellulase activity.Microbiology China, 2011,38(4):531-538.
[5] 李红亚, 李术娜, 王树香,等.产芽孢木质素降解菌MN-8的筛选及其对木质素的降解.中国农业科学, 2014, 47(2):324-333. LI H Y, LI S N, Wang S X, et al. Screening, identification of lignin-degradating Bacillus MN-8 and its characteristics in degradation of maize straw lignin. China Agriculture Science, 2014, 47(2):324-333.
[6] 高云航,王巍,勾长龙,等.响应面优化Bacillus licheniformis MX5产木质素过氧化物酶的发酵条件.中国农业大学学报,2015,20(5):209-215. Gao Y H, Wang W, Gou C L, et al. Response surface optimization of fermentation conditions for lignin peroxidase by Bacillus licheniformis MX5. Journal of China Agricultural University, 2015,20(5):209-215.
[7] Cho S, Moon H I, Hong G E. Biodegradation of capsaicin by Bacillus licheniformis SK1230.Journal of the Korean Society for Applied Biological Chemistry, 2014, 57(3):335-339.
[8] 山其木格,包慧芳,王炜,等.地衣芽孢杆菌WS-6β-葡聚糖酶的基因克隆及表达.生物技术通报, 2008(6):135-138. Shan Q M G, Bao H F, Wang W, et al. Cloning of β-glucanase gene from Bacillus licheniformis WS-6 and expression. Biotechnology Bulletin,2008(6):135-138.
[9] 田李,刘娜, 徐荣旗,等.通过缺失大丽轮枝菌Vdku80构建其高效基因敲除受体菌株. 中国农业科学, 2014, 47(11):2142-2150. Tian L, Liu N, Xu R Q, et al. Construction of enhanced gene knockout frequency recipient strain by deletion of Vdku80 in Verticillium dahliae. China Agriculture Science, 2014, 47(11):2142-2150.
[10] 陈利飞,李猛,马春玲,等.克雷伯氏菌产1,3-丙二醇ldhA基因缺失菌株的构建.生物技术通报,2015, 31(3):121-126. Chen L F, Li M, Ma C L, et al. Construction a metabolic engineering strain to produce 1, 3-propanediol from Klebsiella pneumoniae by ldhA gene deletion mutation. Biotechnology Bulletin, 2015, 31(3):121-126.
[11] Yamamoto S, Izumiya H, Morita M, et al. Application of λRed recombination system to Vibrio choleraegenetics:simple methods for inactivation and modification of chromosomal genes. Gene, 2009,438(1-2):57-64.
[12] 王远,高秋强,辛秀娟,等.β-葡萄糖苷酶基因和内切葡聚糖酶基因在枯草芽孢杆菌中的表达.应用与环境生物学报,2013,19(6):990-996. Wang Y, Gao Q Q, Xin X J, et al. Expression of endoglucanase gene and β-glucosidase genes in Bacillus subtilis. Chin J Appl Environ Biol, 2013,19(6):990-996.
[13] Qiu D S, Liu X J, Wang J,et al. Artificial synthesis of TAT PTD-tachyplesin fusion gene by overlap extension PCR. Agricultural Biotechnology, 2013, (3):1-4,17.
[14] Ho S N, Hunt H D, Horton R N, et al. Site-directedmutagenesis by overlap extension using the polymerase chain reaction. Gene, 1989, 77(1):51-59.
[15] 李瑞芳,薛雯雯,黄亮,等. 枯草芽孢杆菌感受态细胞的制备及质粒转化方法研究. 生物技术通报,2011,50(5):227-230. Li R F, Xue W W, Huang L, et al. Competent preparation and plasmid transformation of Bacillus subtilis. Biotechnology Bulletin,2011,50(5):227-230.
[16] 温赛, 杨建国. 地衣芽孢杆菌原生质体电转化方法的研究. 中国生物工程杂志, 2015, 35(7):76-82. Wen S, Yang J G. Transformation of undomesticated strains of Bacillus licheniformis by protoplast electroporation. China Biotechnology, 2015, 35(7):76-82.
[17] 刘乐,鞠美庭,李维尊,等.纤维素降解细菌筛选及降解特性分析.环境污染与防治,2012,34(4):40-43. Liu L, Ju M T, Li W Z, et al. Study on the screening of cellulose-degrading bacteria and the degradation characteristics. Environmental Pollution & Control, 2012,34(4):40-43.
[18] 罗紫臣.纤维素酶的分泌表达及其在生物炼制中的应用[D].上海:华东理工大学, 2015. Luo Z C. Secretive Expression of Cellulose Enzyme and Its Application in Biorefinery Processes. Shanghai:East China University of Science and Technology, 2015.
[19] Sakaguchi K, He J L, Tani S, et al. A targeted gene knockout method using a newly constructed temperature-sensitive plasmid mediated homologous recombination in Bifidobacterium longum. Applied Microbiology and Biotechnology, 2012, 95(2):499-509.
[20] Sung B H, Lee J H, Kim S C. Scarless chromosomal geneknockout methods. Methods Mol Biol, 2011,765(765):43-54.
[21] VanVliet O P R, Faaij A P C, Turkenburg W C. Fischer-tropsch diesel production in a well-towheel perspective:a carbon, energy flow and cost analysis. Energy Convers Manage, 2009, 50(4):855-876.
[22] 张森翔, 尹小燕, 龚志伟,等. 纤维素酶降解秸秆特性及其基因工程研究进展.生物技术通报, 2015,31(5):20-26. Zhang S X, Yin X Y, Gong Z W, et al. Advances in research of straw degradation with cellulase and Its genetic engineering. Biotechnology Bulletin, 2015, 31(5):20-26.

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