|
|
Development of a Reverse Dot Blot System for rapid detection of HBV Genotypes |
ZHAO Li,ZHANG Wen-lu,HU Yuan,LIU Yan-chen,LAI Guo-qi,YANG Feng,HUANG Ai-long |
Key Laboratory of Molecular Biology on Infectious Diseases,Ministry of Education, Chongqing Medical University ,Chongqing 400016,China |
|
|
Abstract To develop a reverse dot blot assay for rapid detection of HBV genotypes. Specific oligonucleotides probes were desighed and immobilized on nylon membranes. The DNA sample to be tested was PCR-amplified with DIG labeling primers and then hybridized with the immobilized probes. This procedure for detecting HBV genotypes was simple,rapid and specificity. 30 specimens in Chongqing area were collected and detected by this method, and results were evaluated using direct sequencing. Results showed that: This new method was applicable to precise detection HBV genotypes for specimen with copies up to 103, and the HBV genotyping results showed that genotype B was the predominant genotype in Chongqing area.
|
Received: 28 July 2009
Published: 21 December 2009
|
|
|
|
[1] |
McMahon B J. Epidemiology and natural history of hepatitis B. Semin Liver Dis,2005,25(Suppl)1:3~8
|
|
|
[2] |
Okamoto H F,Tsuda H,Sakugawa R I,et al. Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes. J Gen Virol,1988,69:2575~2583
|
|
|
[3] |
Norder H, Courouce A M, Magnius L O. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology ,1994,198:489~503
|
|
|
[4] |
Zeng G,Wang Z,Wen S,et a1.Geographic distribution,virologic and clinical characteristics of hepatitis B virus genotypes in China.J Viral Hepat,2005,12:609~617
|
|
|
[5] |
Thakur V, Guptan R C, Kazim S N, et al. Profile, spectrum and significance of HBV genotypes in chronic liver disease patients in the Indian subcontinent. J Gastroenterol Hepatol ,2002,17(2):165~170
|
|
|
[6] |
Lee C M,Chen C H,Lu S N,et al. Prevalence and clinical implications of hepatitis B virus genotypes in southern Taiwan. Scand J Gastroenterol,2003,38(1):95-101
|
|
|
[7] |
Wai C T,Chu C J,Hussain M,et al. HBV genotype B is associated with better response to interferon therapy in HBeAg(+)chronic hepatitis than genotype C. Hepatology ,2002,36(6):1425~1430
|
|
|
[8] |
Saiki R K,Walsh P S,Levenson C H,et al. Genetic analysis of amplified DNA with immobilized sequencespecific oligonucleotide probes. Proc Natl Acad Sci USA,1989,86:6230~6234
|
|
|
[9] |
Ou Z Y, Liu N, Chen C J,et al. Rapid and accurate genotyping of YMDD motif variants in the hepatitis B virus genome by an improved reverse dot blot method. J Clin Microbiol, 2005, 43(11): 5685~5689
|
|
|
[10] |
Lovicu M,Dessi V,Zappu A ,et al. Efficient strategy for molecular diagnosis of Wilson Disease in the Sardinian population. Clinical Chemistry, 2003, 49(3):496~498
|
|
|
[11] |
Sambrook J, Fritsch E F, Maniatis T,et al. Molecular Cloning: A laboratory Manual.2nd ed. New York:Cold Spring Harbor Laboratory Press, 1989
|
|
|
[12] |
Lindh M,Andersson A S,Gusdal A,et a1.Genotypes,nt1858 variants,and geographic origin of hepatitis B virus large scale analysis using a new genotyping method.J Infectious Disease,1997,175:1285~1293
|
|
|
[13] |
Naito H, Hayashi S,Abe K. Rapid and specific genotyping system for hepatitis B virus corresponding to six major genotypes by PCR using typespecific primers. J Clin Microbiol,2001, 39:362~364
|
|
|
[14] |
Usuda S,Okamoto H,Tanaka T,et a1.Differentiation of hepatitis B virus genotypes D and E by ELISA using monoclonal antibodies to epitopes on the preS2region product. J Virol Methods, 2000, 87:81~89
|
|
|
[15] |
Norder H, Hammas B, Lofdahl S,et al. Comparison of the amino acid sequences of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains. J Gen Virol,1992,73: 1201~1208
|
|
|
[16] |
肖蕾,王雪刚,聂军等.中国广东地区乙型肝炎病毒基因亚型的分布.肝脏.2006,6(11):149~151
|
|
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|